Pseudomonas sp. SD17-1: N0B28_23500
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Entry
N0B28_23500 CDS
T11807
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psdd Pseudomonas sp. SD17-1
Pathway
psdd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psdd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N0B28_23500 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdd03021
]
N0B28_23500 (rpoA)
03400 DNA repair and recombination proteins [BR:
psdd03400
]
N0B28_23500 (rpoA)
Enzymes [BR:
psdd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N0B28_23500 (rpoA)
Transcription machinery [BR:
psdd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N0B28_23500 (rpoA)
DNA repair and recombination proteins [BR:
psdd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N0B28_23500 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
WEJ21188
LinkDB
All DBs
Position
complement(5141050..5142051)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacgccccgccacatcgatgtgcaggtcgtcagt
ccaacccgcgctaaaatcactctcgagcctctcgagcgtggttttggccataccctgggc
aacgcgctgcgccgcatcctgttgtcctccatgcctggctgtgcagtagtcgaggccgag
atcgacggtgtactccacgagtactccgccatcgaaggtgttcaggaagacgtcattgaa
atcctgttgaacctgaaaggcctggctatcaaactgcacggtcgtgacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaaccccgatcacgtaatcgctaacctggcgtccaatggcgccttgaac
atgaagctcaccgtagctcgtggtcgtggttatgaaccggccgattcgcgtcagagcgat
gaagacgaaagccgcagcattggtcgcttgcagctcgactcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgtactaacctggacaagctg
gttattgatctggaaaccaacggtactctggatcctgaagaggcaatccgtcgtgctgca
accatcctgcaacagcagttggctgcattcgtcgacctcaagggtgacagcgaaccagtg
gtagtcgaacaggaagacgagatcgatccgatcctgcttcgtccggttgacgatctggaa
ttgaccgtgcgttcggccaactgccttaaggcggagaacatttactacatcggcgacctg
attcagcgtaccgaagtagaactgttgaagactccgaacctgggcaagaaatccttgacc
gaaatcaaggacgttctggcctcccgtggtctgtccctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaggacgacaaggcgactgcctga
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