Pseudomonas sp. SD17-1: N0B28_23655
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Entry
N0B28_23655 CDS
T11807
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psdd Pseudomonas sp. SD17-1
Pathway
psdd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psdd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N0B28_23655 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdd03021
]
N0B28_23655 (rpoC)
03400 DNA repair and recombination proteins [BR:
psdd03400
]
N0B28_23655 (rpoC)
Enzymes [BR:
psdd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N0B28_23655 (rpoC)
Transcription machinery [BR:
psdd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N0B28_23655 (rpoC)
DNA repair and recombination proteins [BR:
psdd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N0B28_23655 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
WEJ21219
LinkDB
All DBs
Position
complement(5159033..5163232)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGNEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDASGKDLLLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTQVLVENERLGAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagtaaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggaaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggtgttgaagtcgcgctggcaaaagttcgtcgtgag
cgcatggcgcacatcgagctggcctcgcctgttgcccacatctggttcctgaagtcgctg
ccgtcgcgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctat
ttcgagagctatgtcgttatcgacccgggcatgaccaccctggaaaaaggccagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggcgatgacttcgacgcccgcatg
ggtgccgaggccgtccgcgaactgctgcacgctatcgacctggaacacgagattggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcga
ctgaagctgatggaggccttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctggatggcggtcgtttc
gcgacctccgacctgaacgacctttaccgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctgtctgcgcctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgcactgctcgacaacggccgtcgcggccgcgccatcaccggatcgaac
aagcgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgcgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagttgccagaggtgtgggatgttcttgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgttcgagccggta
ctgatcgaaggcaaggccatccagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccttcgcaggacgttgtactgggtctgtactacatgacccgcgaagccatcaatgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcggccctgcacgccaagatcaaggttcgtatcaacgaaaccgtgaacgatcgtgat
ggcggcagcgtcaagaacacccgcatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtaccgccaggtctgtcgtacgacgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtcatcttc
gctgaccagctgatgtacaccggttttgcctactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacctgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaacgaagtcgagcaggagtccttcaac
tcgatgtacatgatggctgactccggtgcccggggttcggcagctcagattcgtcagttg
gccggtatgcgtggtctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggtctgagcgtactgcagtacttcatctcgactcacggtgcgcgt
aagggtcttgcggataccgcgttgaaaaccgcgaactccggttacctgacccgtcgtctg
gtagacgtggcgcaggatctggtggttaccgagatcgactgtggcaccgagcagggtctg
gtcatgaccccgcacatcgaaggcggcgacgttgtagagccgctgggtgagcgcgtactg
ggtcgtgtaatcgcccgtgacgtgttcaagcctggcaccgacgacgtcatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggcggtatggttcgtctg
cacaacctcaagcaggttgagcgtgccgacggcaacctggttgccgtatcgcgttccggc
gagttggcgattgccgacgagttcggtcgtgagcgcgagcgttacaagctgccttacggc
gccgtgatttcggtgaaggaaggcgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgaccttcgtgggcatg
gaagaaggcatcacgatcaagcgtcagaccgacgaattgaccggcctgaccaacatcgag
gttctggacgtcaaagaccgtccggctgcaggcaaggaaatccgtcctgcaatcaagatg
gtcgacgccagcggcaaggatctgctgttgccaggtaccgacgtaccggctcagtacttc
ctgccagccaacgccctggtcggtgtggctgacggtgcacagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtccaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgattctggctgaagtcagc
ggtaccatcgccttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgaac
gatggcagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagtgatctcggacggtcctagcgatccgcacgacatt
ctgcgtctgctgggtgttagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagattgccgagtcgggtgactccagcttcatcaagggcgaccagatg
gaactgacccaggtactggtagagaacgagcgccttggcgcggaagacaagtttgtctcc
aagttcactcgtgtactgctgggtatcaccaaggcctcgctgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaagccgttgcgt
gttagcgccagtgaagtggaagctgcactgaccgaagcgctgaactccagcggcaactaa
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integrated database retrieval system
