Pseudomonas sp. SD17-1: N0B28_25225
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Entry
N0B28_25225 CDS
T11807
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psdd Pseudomonas sp. SD17-1
Pathway
psdd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N0B28_25225 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdd03021
]
N0B28_25225 (rho)
03019 Messenger RNA biogenesis [BR:
psdd03019
]
N0B28_25225 (rho)
Transcription machinery [BR:
psdd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
N0B28_25225 (rho)
Messenger RNA biogenesis [BR:
psdd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N0B28_25225 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
WEJ21509
LinkDB
All DBs
Position
complement(5508571..5509830)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgatctgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgttgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgacggcgtgctggagattctccaggac
ggtttcggcttcctgcgttcggctgacgcttcgtacctggccggcccggacgacatctat
gtctcgcccagccagattcgtcgcttcaacctgcgtaccggtgacaccatcgtcggcaag
atccgcccgcccaaagaaggcgagcgctacttcgcgctgctcaaggtcgacaccatcaac
tacgaccgtccggaaaacgcgaagaacaagatcctcttcgaaaacctgacgccgttgttc
ccgaacaagcgcctgaagatggaagccggcaacggttccaccgaagacctcaccggtcgc
gtcatcgacctgtgcgcgccgatcggcaagggccagcgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcggccaacatcacccgcaacaacccg
gagtgccacctgatcgtgctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgacgagccgccaacccgtcacgtg
caagtggccgagatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactcgatcactcgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgacgcccacgccctggagaagccgaagcgtttc
ttcggtgctgcacgtaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgagaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcccctggaccgtcgcattgccgagaagcgcgtgttcccggccatcaacatc
aaccgttcgggtacccgtcgcgaagagctgctgaccgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgagatcgccgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa
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