Pseudosulfitobacter sp. DSM 107133: DSM107133_00047
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Entry
DSM107133_00047 CDS
T11885
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psdm Pseudosulfitobacter sp. DSM 107133
Pathway
psdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM107133_00047 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdm03021
]
DSM107133_00047 (rho)
03019 Messenger RNA biogenesis [BR:
psdm03019
]
DSM107133_00047 (rho)
Transcription machinery [BR:
psdm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DSM107133_00047 (rho)
Messenger RNA biogenesis [BR:
psdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSM107133_00047 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
S1CSD-TOTE-2
ATPase_2
AAA
OB_RNB
AAA_25
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
UOA25375
LinkDB
All DBs
Position
47277..48575
Genome browser
AA seq
432 aa
AA seq
DB search
MTTETIEATETVECLTLAELKANSPKDLLAMAEELEIENASTMRKGEMMFQILRERADEG
WDVSGDGVLEVLQDGFGFLRSPEANYLSGPDDIYVSPEMIRKYSLRTGDTIDGGIRAPDN
DERYFALTDVANINFEDPEKARHKIAFDNLTPLYPDERLTMETDEPATKDRSARIIDLVS
PIGKGQRSLIVAPPRTGKTVLLQNIANSIERNHPECYLIVLLIDERPEEVTDMQRSVKGE
VISSTFDEPATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLT
GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLD
RKIADKRVFPAIDILKSGTRKEELLVDKIDLAKTFVLRRILNPMGTTDAIEFLISKLKQT
KTNSDFFDSMNT
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgaaacaatcgaagcaactgaaacagttgaatgcctgacgttggccgagttg
aaggccaacagccccaaagatctgctggcgatggccgaagagcttgagatcgagaacgcc
tcgaccatgcgcaagggcgaaatgatgttccagatcctgcgcgaacgcgccgatgaaggc
tgggatgtctccggcgacggcgtgctggaagtgctgcaagacggtttcggtttcctgcgc
tcgcccgaggctaactatctgtccggtcccgacgacatctatgtgtcgcccgagatgatc
cgcaaatattcgctgcgcaccggcgacaccatcgacggcggtattcgcgcgccggacaat
gatgaacgctatttcgcgttgacagatgtggcgaacatcaacttcgaagatcccgaaaag
gcccgtcacaagatcgcctttgacaacctgacgccgctgtaccccgacgagcgcctgacc
atggaaaccgacgaacccgcgaccaaggaccggtcggcgcggatcatcgacctggtgtcg
cccatcggcaaaggccagcggtcgctgatcgtggcgccgccgcgcaccggtaaaacggtt
ctgttgcaaaacatcgccaacagcatcgaacgcaaccaccctgaatgctacctgattgtt
ctgctgatcgacgagcggcctgaagaggtcaccgacatgcagcgttcggtcaagggcgag
gttatcagctcgacctttgacgaacccgcaacgcgccacgtcgccgtgtcggaaatggtc
atcgaaaaggccaagcgtctggtcgagcacaaacgcgacgtggtgatcctgctggattcg
atcacccgtctgggccgcgcgttcaacaccgtcgtgccgtcgtcgggcaaggttctgacc
ggtggtgtggatgcaaatgccctgcaacgcccgaagcgtttcttcggtgctgcacggaac
atcgaagagggcggcagcctgaccatcatcgcgactgcgctgatcgacaccggcagccgc
atggacgaggtgatttttgaagagttcaaaggcaccggtaactcggaaattgtgctggat
cgcaagatcgcggacaaacgcgtgttcccggccatcgacatcctgaaatccggcacccgg
aaagaagagctgttggtcgacaaaatcgatctggccaaaacctttgtcctgcgccgcatt
ctgaatccgatgggcaccaccgacgccatcgaattcctgatttcgaagttgaagcagacc
aagacaaattcggatttcttcgattccatgaacacctga
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