Pseudosulfitobacter sp. DSM 107133: DSM107133_00276
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Entry
DSM107133_00276 CDS
T11885
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psdm Pseudosulfitobacter sp. DSM 107133
Pathway
psdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM107133_00276 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psdm03019
]
DSM107133_00276 (pnp)
03016 Transfer RNA biogenesis [BR:
psdm03016
]
DSM107133_00276 (pnp)
Enzymes [BR:
psdm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DSM107133_00276 (pnp)
Messenger RNA biogenesis [BR:
psdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSM107133_00276 (pnp)
Transfer RNA biogenesis [BR:
psdm03016
]
Prokaryotic type
tRNA degradation factors
DSM107133_00276 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
LTXXQ
Motif
Other DBs
NCBI-ProteinID:
UOA25599
LinkDB
All DBs
Position
complement(280927..283059)
Genome browser
AA seq
710 aa
AA seq
DB search
MFNVTTKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFMGPIAGCRVGFEGGDYVLNPTVDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHEQIQPVIDLIIELAESAAKEPFDFQ
PADYSELSAAVKAAGETEMRAAFAISDKQERTTAVAAARETIMAALSDEQKEDANLGSAL
KKLEASILRGDVVKTGKRIDGRQTDEIRDIVCETGFLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVAGPGRREIGHGKLAWRALQAVLPA
STDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEEDGSYA
ILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMEKALAQAKAGRMHILGE
MNKALTGASDFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGIIKI
ASPNGEAIKKAYDMIWSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIKKEEDAE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgtaacgacgaaatcaatgcagtggggcgaagaaacgctgacactggaaacc
ggaaaagtggcccgtcaggcggacgggtcggtgatcgccacgctgggcgagacttcggtc
atggcaaacgtaacctttgccaagaaacaaaaacccggtcaggactttttcccgctgacc
gtccactaccaggaaaaatactatgctgcgggcaaagtgcccggcggctttttcaaacgt
gaggcccgccccaccgagaaagaaaccctgaccgcgcgtctgatcgaccgtccgatccgc
ccgctgttcgtccccggcttcaaaaacgaagttctggtgatgtgtaccgttctgtcgcac
gacctggtcaacgacccggacatggttgcgatgatcgccgcaagcgccgcgctgaccatt
tcgggcgcgcctttcatgggcccgatcgccggttgccgcgtgggctttgaaggtggcgat
tacgtcctgaaccccacagtcgacgacatgcaggacctgcgtctgaaccccgaacaacgt
cttgatctggttgttgccggcaccaaagacgccgtgatgatggttgaatccgaagcttac
gaactgtcggaagccgaaatgctgggtgcggtgaaattcgcccacgagcagatccagccg
gtcatcgacctgattatcgaactggctgaaagcgcggccaaagagccgttcgatttccaa
cctgccgattattccgagctgtccgcagccgtgaaagccgcaggcgagaccgagatgcgc
gccgcttttgcgatcagcgacaagcaagagcgtacaacagccgttgccgccgcccgcgag
accatcatggccgcgctgtcggacgagcaaaaagaagatgcgaaccttgggtccgctctg
aaaaagctggaagcgtccatcctgcgcggtgacgttgtgaaaaccggcaagcgtatcgac
ggccgtcaaaccgacgagatccgcgacatcgtgtgcgaaaccggctttttgccgcggacc
cacggttcggctctgttcacccgtggtgaaacacagggtctggtcgtgaccacgctgggc
accggcgacgacgaacaattcatcgacgcgctgcacggcaacttcaaatccaacttcctg
ctgcactacaacttccctccctattcggttggtgaagtgggtcgtgtcgcaggtccgggc
cgccgcgagatcggccacggcaagctggcatggcgtgcgttgcaggcggttctgcccgca
tccaccgacttcccctataccatccgtgttgtgtccgagatcactgaatcgaacggctcc
agctcgatggcctctgtctgcggcggttcgctgtcgatgatggacgcgggcgttccgctg
aaatcggccgtggccggtgttgcgatgggtctgatcctggaagaagacggatcatatgcg
atcctgtcggacatcctgggtgacgaagaccacctgggcgacatggatttcaaagtggca
ggcaccgaaaacgggatcacctcgctgcaaatggacatcaagatcgcaggcatcacgccc
gagatcatggaaaaagcgctggctcaggccaaagcgggccggatgcacattctgggcgag
atgaacaaagcactgaccggcgcgtcggacttctcggtgcacgcaccgcgcatcgaaacc
atgcaggtgcctacggataaaatccgcgaagtcatcggttcgggcggtaaagtgatccgt
gaaatcgtcgaagtgtcgggcgccaaggtcgacatcaacgacgacggcatcatcaagatt
gcgtcgcccaacggcgaagcgatcaagaaagcctatgacatgatctggtcgatcgtggcc
gagccggaagaaggtgccgtttacaccgggaccgttgtgaaaatcgtcgatttcggcgct
ttcgtgaacttctttggcaagcgcgatggtctggtgcacgtcagccagatcgaaaaccgc
cgcctgaaccatccgtcggatgtgctgaaggaaggccaggaggtcaaagtgaagcttttg
ggctttgatgaccgtggcaaggtgcgcctgtcgatgaaagtcgtcgatcaggaaaccggc
gaagaaatcaagaaagaagaagacgccgaataa
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integrated database retrieval system
