Pseudosulfitobacter sp. DSM 107133: DSM107133_01893
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Entry
DSM107133_01893 CDS
T11885
Symbol
rne_2
Name
(GenBank) Ribonuclease E
Organism
psdm Pseudosulfitobacter sp. DSM 107133
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Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UOA27176
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Position
1920251..1923178
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AA seq
975 aa
AA seq
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MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFTEIHPDYYQIPIADREALMEEERAYAEAQRAKDEDDDKPKRSSRSRSRSRSST
KAEDTNSDDAVTSSDDVGGMETIDLSDDADAVDEGSSPMETVRETPVETPAADEDQSHDD
DDDNAGDEDTAADAADKDDSIESVADEDDSEDIRPARKPRAKRYKIQEVIKVRQILLVQV
VKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIANEIEVPRG
AGLIVRTAGAKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYN
RDIDEVFVEGERGYRIAKDFMKMIMPSHAKNVKRYEDSLPLFARYQVESYLAGMFNPTVQ
LPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRDLAGLIV
IDFIDMDERKNNAAVEKMMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPC
QACHGTGLIRSDDNLALSILRQIEEEGTRRRSREVLVKCPVGISNFLMNQKREHIAQIEA
RYGLSVRIEGDPALVSPDFNIEKFKTATRVVTAATQVVSVDTSIMDQIDEADARAAEAAE
AADIAAEAAQEAKAAQPAPQSHPAAEVGEDGEPKPKRRRRRRRRRSKSSTGEDQNGENGR
DDDDDQDETSDAASTPETKADAPEEGSATKAEESAEAKPKSTRSRSRSSAKKTETAADDS
AAEVPAVDAPAEDAEAAAKPKVTRTRSTRTTAAKSATTAKAKTTAKATTAKTTKAKAAET
EVTDAETPAPKPKRTRVSAKAKAEAAAAAEAAAQTEAPAGEATPEAPAVAEAPVAEAPAA
VAPVAESKPAVTPATDAPAVDVPVAEAQVEQPEAKAEEPAAAPEPTPAPAAEEPAPANED
TPAKPKRKGWWSLGG
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcgatgccacccacgccgaggaaacgcgcgttgtggtggtcgacggaaacaaa
gttgaagagttcgattttgaatctgaaaacaaacgccagcttgctggcaacatctatctc
gccaaggtaacgcgggttgaaccgtcgcttcaggcggcgttcgtagattacggcggcaac
cgccacggtttccttgcgttcacggaaatccatcctgattactatcagatccccatcgcc
gaccgcgaggcgttgatggaggaagaacgcgcctatgccgaagcgcagcgcgccaaggat
gaagatgacgacaagcccaagcggtcttcgcgctcgcgttcgcgcagccggtcgtcaacc
aaggccgaagacaccaacagcgatgatgcggtgacatcttccgatgacgtcgggggcatg
gaaaccattgacctcagcgacgacgcagatgcagtggacgaaggctcgtcgccaatggaa
accgtgcgcgaaacgccggtggaaacacctgcggcggacgaagaccagtcgcatgatgat
gacgacgataatgcgggcgacgaagacactgctgccgatgccgccgacaaagacgacagc
atcgaatctgtcgccgacgaagacgacagcgaagacattcgccccgcgcgcaaaccccgc
gccaaacgctacaagattcaggaagtgatcaaggttcgccagatcctgctggttcaggtc
gtcaaggaagagcgcggcaacaagggtgcagcgttgaccacatacctgtcgctggccggt
cgctattgcgtcctgatgcccaacaccgcccgtggcggtggcatcagccgcaagatcacc
aacgccgttgaccgcaagaagctgaaagagatcgcgaacgagatcgaagtgccccgtggc
gccggtttgatcgtgcgcaccgccggtgccaaacgcaccaaggccgaaatcaaacgcgac
tatgaatacctgcaacgtatgtgggagcagatccgcgagctgacgctgaaatccattgcg
cccgcgaaaatctacgaagagggcgacctgatcaaacgctcgatccgcgatctgtacaac
cgcgacatcgacgaagtgtttgtcgagggcgagcgcggctatcgcatcgccaaggacttc
atgaaaatgatcatgccgtcccatgccaagaacgtgaaacgctacgaagacagcctgccg
ctgttcgcccgctatcaggtcgaaagctatctggcgggcatgttcaaccccacggttcaa
ctgccttcgggtggctatatcgtgatcggtgtgaccgaagcgctggtggcgattgacgtc
aactcgggccgtgccaccaaggaaggctcgatcgagcagaccgcgaccaagaccaacctt
gaggccgccgccgaagtggcgcgccagttgcgtctgcgcgaccttgcggggctgattgtc
atcgactttatcgacatggacgagcgcaagaacaatgccgccgtcgaaaagatgatgaag
gacaagctgaagaccgaccgcgcgcgcattcaggtgggccgcatttcgggctttggcctg
atggaaatgtcgcgccagcgtctgcgccccggcatgatcgaggcgacaacgcagccgtgt
caggcctgccacggcaccggtctgatccggtcggacgacaaccttgcgctgtcgatcctg
cgccagatcgaggaagagggcacccgccgccggtcgcgcgaagtgctggtgaaatgccct
gtcggcatctcgaacttcctgatgaaccagaaacgcgaacatatcgcacagatcgaagcg
cgctatgggctgtcggtgcgtatcgagggtgatccggcgttggtcagccctgatttcaac
atcgaaaagttcaagaccgccacgcgcgttgtgactgccgccacgcaggtggtttcggtc
gacacatccatcatggaccagatcgacgaggcggacgcccgcgcagccgaagctgccgaa
gcggcagacatcgcagccgaagcggcacaagaggccaaggcagcgcagcctgcgccccag
tcgcatcccgccgcagaagtgggtgaagacggcgagcccaaacccaagcgtcgtcgtcgg
cgtcgtcggcgcaggagcaagtcgtcgacaggcgaggaccagaacggtgagaacggtcgt
gatgatgatgacgatcaggacgagacgtccgacgccgcatcgacgcccgagaccaaggca
gatgctccagaggaaggttctgcgacaaaggccgaggagagtgccgaggccaagccgaaa
tcgacacgcagccggtcgcgttcttccgcgaagaagaccgagacagctgctgacgatagt
gcagccgaagtccccgcagttgatgcacccgcagaggacgccgaggcagcggccaagccc
aaggtgacgcgcacacggtcgacccgcacgaccgctgccaaatctgcaaccaccgccaag
gccaagacgacagccaaggcgacaactgcaaagaccaccaaggcgaaagcggccgaaacc
gaagtcaccgacgctgaaacgcccgcgccaaagcccaagcgcacgcgggtttcggccaag
gccaaggcagaagccgctgccgccgcagaggcagcagcccagaccgaagcgcccgcaggc
gaggcgacgcccgaagcgcccgcagtcgctgaggcgcccgttgccgaagctccggcggct
gtggctccggttgctgagagcaagccggcagtgactccagcgaccgatgccccggcagtt
gatgttccggtcgccgaagcgcaggttgaacagccagaggccaaggcagaagaacccgcg
gcggcacctgaacccacgcctgcacccgcagccgaggaacctgcacctgcgaacgaagac
acccccgccaagcccaagcgcaagggctggtggtctttgggtggctag
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