Pseudosulfitobacter sp. DSM 107133: DSM107133_02946
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Entry
DSM107133_02946 CDS
T11885
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psdm Pseudosulfitobacter sp. DSM 107133
Pathway
psdm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psdm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DSM107133_02946 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdm03021
]
DSM107133_02946 (rpoD)
Transcription machinery [BR:
psdm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DSM107133_02946 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Lmo0850
DUF4132
Motif
Other DBs
NCBI-ProteinID:
UOA28201
LinkDB
All DBs
Position
complement(2954290..2956275)
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AA seq
661 aa
AA seq
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MAAKDTNEDAKTDDSDTGHSLDMSQAAVKKMIAEAREKGYITYDQLNTVLPPDQVSSEQI
EDVMSMLSEMGINIIEDEEAEDEEGKGSTELATTEGTREITLGSGTSEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDV
IDLEATFGDQLGDEDSTEAVVSGATSETSKSSEGGKTELDADGNPIASDDDDDEDEQANM
SLAAMEAALKPQVLEALDIIADDYVKLSEMQDSRISATLNEDSSFSAVDESTYQKLRSEI
VLLVNDLHLHNNRIEALIDQLYGINRRIMQIDSAIVKLADQARINRKEFVDAYRGHELDP
NWMERMGEKSGRGWQMFIERSADKVDELRNDMAQVGQYVGLDISEFRRIVQQVQKGEKEA
RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLE
KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLT
PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaaagacacaaacgaagacgccaagaccgacgattccgataccggtcactcg
cttgatatgagtcaggcggccgtcaagaagatgatcgccgaagcccgtgaaaagggctat
atcacctatgaccagctgaacaccgttctgccccccgatcaggtcagttccgaacaaatc
gaagacgtgatgtcgatgctgtccgaaatgggcatcaacatcatcgaggacgaggaagcc
gaggacgaagagggcaagggttctaccgagttggccaccaccgaaggcacgcgtgaaatc
acgctgggctcgggcacctcggaaaaactggaccgcactgacgatccggtgcgcatgtac
ctgcgcgagatgggcagcgtcgaactgctgagccgcgagggcgagattgccatcgccaaa
cgtatcgaggccggtcgcaacaccatgatcgcgggcctgtgtgaaagcccgctgaccttt
caggcgatcacgatctggcgcgacgaacttctgagcgaagacattctgctgcgcgatgtg
atcgaccttgaggcgacgttcggggatcagttgggcgacgaggattcgactgaagccgtt
gtgtccggggcgacatcggaaacgtcgaaatccagtgaaggtggcaagacagagctggat
gccgacggcaacccgattgcttccgacgatgacgatgacgaagacgaacaggccaacatg
tcgctggccgcgatggaagcggcgctgaaaccgcaggttctggaagcgctggacatcatc
gccgacgattacgtcaaattgtcagaaatgcaggacagccggatttcggcaacgttgaac
gaagattccagctttagcgccgttgacgagagcacctatcaaaagctgcgctcggaaatc
gtgctgctggtgaacgatctgcacctgcacaacaaccgtatcgaagcgctgattgaccag
ttgtacggcatcaaccgccgcatcatgcagatcgacagcgccatcgtgaagctggcggat
caggcgcgcatcaaccgcaaggaattcgtcgacgcctatcgcggtcacgagcttgatccc
aactggatggagcggatgggcgaaaagtccggtcgtggctggcagatgttcatcgaacgc
tcggcggacaaggttgacgaactgcgcaacgatatggcgcaggtcggccagtatgtcggt
ctggatatctctgaattccgccgcatcgtgcagcaggttcaaaagggcgagaaagaagcc
cgtcaggccaagaaggaaatggtcgaggccaacctgcgtctggtgatctcgattgccaag
aaatacaccaaccgtggcctgcaattccttgatctcattcaggaaggcaacatcggcctg
atgaaggcggtggataaattcgaatatcgtcgcggctataaattctcgacctatgcgacc
tggtggatccgtcaggcgatcacccgctcgatcgccgatcaggcacgcaccatccgtatt
ccggtgcatatgatcgagacgatcaacaaactggtccgcaccggtcgtcagatgctgcat
gaaatcggccgcgagccgacgccggaagagctggccgaaaagctgcaaatgccgctggaa
aaggtccgcaaggtgatgaaaatcgccaaggagccgatctcccttgaaacgcccatcggc
gacgaggaagacagccagctcggtgatttcatcgaggacaagaatgccgtgctgccgctc
gacagcgccattcaggaaaacctcaaggaaaccaccacccgcgtgctggcctcgctcacc
ccgcgcgaggaacgggttctgcggatgcgctttggcatcggcatgaacaccgaccacacg
cttgaagaagtcggccagcagttcagcgtgacccgcgagcggatccgccagatcgaggcc
aaggccctgcgcaagctgaaacaccccagccggtcgcgcaagctgcggtcgttcctggac
cagtaa
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