Pseudosulfitobacter sp. DSM 107133: DSM107133_03227
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Entry
DSM107133_03227 CDS
T11885
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psdm Pseudosulfitobacter sp. DSM 107133
Pathway
psdm03030
DNA replication
psdm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM107133_03227 (dnaE1)
03430 Mismatch repair
DSM107133_03227 (dnaE1)
03440 Homologous recombination
DSM107133_03227 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psdm03032
]
DSM107133_03227 (dnaE1)
03400 DNA repair and recombination proteins [BR:
psdm03400
]
DSM107133_03227 (dnaE1)
Enzymes [BR:
psdm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSM107133_03227 (dnaE1)
DNA replication proteins [BR:
psdm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DSM107133_03227 (dnaE1)
DNA repair and recombination proteins [BR:
psdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DSM107133_03227 (dnaE1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UOA28478
LinkDB
All DBs
Position
complement(3204586..3208101)
Genome browser
AA seq
1171 aa
AA seq
DB search
MSNDPRFIHLRTHSEYSLLEGALRLKKLPDLCKKHDMPALALTDTNNMFAALEYSVTLSG
AGIQPIIGCQVDVTWVETRPGDRPRLPAGLVLLAQNETGYENLMKLNSCLYLKGDGQLPQ
VTLDELEALSAGLICLTGGPEGPVGQLLRAGQRPAAQAMMDRLAAAFPQRLYVELQRHPG
PDGQPDAEKLTERPFVEMAYAMELPLVATNDVYFPASDMYEAHDALICIAEGAYVDQQQD
RRRLTNQHYFKSQSEMVTLFADLPEAVQNTVEIAKRCAFMAYRRDPILPKFADDEVVELR
RQANEGLQARLAVIPHAASVEDYQKRLDFELDIIEGMGFPGYFLIVADFIKWAKDENIPV
GPGRGSGAGSLVAYALTITDLDPLRYALLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKLIPVEGVKPVSIAKALI
DEPRLRDEARNEEVVKRLLDYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIRGAGRDLHTSADGTQLYEPAPGTE
NDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGQRERENLHPTIDHILDETQGIIVYQEQVMQIAQEMAGYSLGGADLLRR
AMGKKIQEAMDAERPKFLEGSKANGVDKDKAMEVWNLLDKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKAMGLPWVPPCVNRSDATFKVVDGA
LVYALGALKNVGVEAMKLVTEGRKVDGVDKPFATLFDLARRVDLKRVGKRPLEMLARSGA
FDQLDNNRRRVFDALDALVQYSAAIHDQKNSNQVSLFGEAGDDLPEPRMMPGDDYLPAER
LSEEFKAVGFYLSGHPLDDYAGALKRKGVQTLDEVLADVERRGAKNAKLAGVVAGCQIRK
SAKGNRFAFAQLSDTTGAYEVTLFSEALEKSQDFLVTGAKVIITAEATMESDQLKLLARS
VAPIDAVVADVGGMGLRVFINDAGAVGSIASVLEGAAQGQRAIGRGPVQLCLMGAGLNGE
VDVELGDDFPVNPQIKGAIKSLGGVVSVEEI
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgatccccgattcattcacctgcgcacccattccgagtattccctgctggag
ggcgcgctgcggctgaaaaagctgcccgacctgtgcaaaaagcacgacatgcccgcgctg
gcgctgactgacaccaataacatgttcgcggcactggaatattccgtgaccctgtcgggg
gcgggcatccagccgatcatcggctgtcaggtggatgtgacttgggtcgagacccgcccc
ggcgaccgtccgcgcctgcctgcgggactggtgctgctggcccagaacgagacgggttac
gaaaacctgatgaagctgaactcgtgcctgtacctcaagggcgacgggcaattgccgcag
gtcacgctggacgagcttgaggcactttcggcgggtctgatctgtttaaccggcgggccg
gaggggcccgtgggccagcttttgcgtgcaggccagcgcccggcggcacaggcgatgatg
gaccggctggcggcggcattcccgcagcgtttgtatgtcgaattgcagcgccatcccgga
ccggacggccagcccgacgcggaaaagctgaccgagcggccgtttgtcgagatggcctat
gcgatggagttgccgttggtcgccaccaacgacgtttatttccctgcctcggatatgtac
gaggcgcatgacgcgctgatctgtattgccgagggcgcctatgtcgaccagcagcaggac
cgccgccgcctgaccaaccagcattatttcaaatcgcaatccgagatggtgacgctgttt
gccgacttgccggaagcggtgcagaacacggtcgagattgccaaacgctgcgccttcatg
gcctatcgccgcgatccgatcctgccgaagtttgccgatgacgaggtggtcgagctgcgc
cgtcaggccaacgagggcctgcaagcgcggctggcggtgatcccgcacgcggcctcggtg
gaagactaccagaagcggctggatttcgagctggacatcatcgaaggcatggggttcccc
ggctacttcctgatcgttgccgatttcatcaaatgggccaaggacgagaatatccccgtg
ggcccgggccgtgggtcgggggcgggcagccttgtggcctatgcgctgaccatcaccgac
cttgacccgctgcgctatgcgctgctgttcgaacggttcctgaaccccgaacgggtcagc
atgcccgactttgacatcgacttttgcatggaccgccgcgaagaggtgatccgctatgtg
cagcagaaatatggccgcgacaaggtggggcagatcatcacattcggtgcgctcttgtcc
aaggcggcggtgcgcgacatcgggcgtgtgttgcagatgccatacgggcaggttgaccgg
ctgtcgaaactgattccggtcgagggggtcaaacccgtcagcatcgccaaggcgctgatc
gacgagccgcgcctgcgcgacgaggcgcgcaacgaagaggtggtcaaacggctgctggat
tacggccagcaggtcgagggattgttgcgcaacgcatcgacccacgccgccggtgttgtg
atcggtgaccgtccgctggatgcgctggtgccgctgtaccaggacccgcggtctgacatg
cccgcaacgcagttcaacatgaaatgggtcgaacaggccggtctggtcaagttcgacttt
ctgggcctgaaaaccctgaccgtgatccagaacgctgtggaccagatccggggcgcgggg
cgcgacctgcacacctcggcggatggcacgcagctttatgaacccgcgccggggaccgag
aacgacatcaacgccatcccgctggatgacgaggcctcctacaagctctacgccgctgcc
aagaccgtcgccgtgttccaggtggaatccagcggcatgatggacgcgctgaaaaggatg
aagccgacctgtatcgaggacatcgtggcccttgtggcgctgtatcgtcccggtccgatg
gaaaacatcccgacctattgcgaggtcaagaacggccagcgcgagcgcgagaacctgcac
ccgaccatcgaccatattctggacgagacccagggcatcatcgtttatcaggaacaggtg
atgcagatcgcgcaggaaatggcgggctacagccttggcggtgccgacttgttgcgccgt
gcgatgggtaagaaaattcaggaagcgatggacgccgagcggcccaagttcctggaaggt
tccaaggccaatggcgtcgacaaggacaaggcgatggaggtctggaaccttctcgacaaa
ttcgccaactacggtttcaacaaatcccacgcggcggcctatgcggtggtcagctatcag
accgcatggctcaaggcgaaccatccggtcgagttcatggccggtgtgatgaactgcgat
atccacctgaccgacaagctggcgatttatttcgaagaggtccgcaaggcaatgggcctg
ccgtgggtgccgccctgtgtgaaccgctctgatgcgacgttcaaagtggtcgacggcgcg
ctggtctatgcgctgggcgcgctgaaaaacgtgggcgtcgaggcgatgaagctggtgacc
gaagggcgcaaggtggacggcgtggacaagccctttgccacgctctttgatctggcacgc
cgcgtcgatctgaagcgtgtgggcaagcgtccgctggaaatgctggcgcgttcgggggcg
ttcgaccagctcgacaacaaccgccgccgggtgttcgatgcgctggacgcgctggtgcaa
tattccgccgcgatccacgatcagaagaattccaatcaggtgtcgctgttcggcgaagca
ggtgatgacctgcccgaaccacggatgatgccgggtgacgattacctgcccgccgaacgg
ctgagcgaagaattcaaggccgtgggcttttacctgtcgggtcacccgctggacgattac
gccggtgcgctgaaacgcaagggcgtgcagacgctggacgaggtgctggccgatgtggaa
cggcgcggggccaagaacgccaaactggcgggcgtggtcgcgggctgtcagatccgcaag
tcggccaagggcaaccgctttgcctttgcgcagctttcggacaccaccggcgcctacgag
gtcacgctgttttccgaagcgctggagaaatcgcaggattttctggtgaccggcgccaag
gtgatcatcaccgccgaggcgacgatggaaagcgaccagttgaagctgctggcgcggtct
gtcgcgccgattgatgcggtggtggccgatgtgggcggcatggggctgcgcgtgttcatc
aacgatgcaggggcggtcggctcgattgcctcggtgctggaaggggcggcgcagggccag
cgcgccatcgggcgcggcccggtgcaactgtgcctgatgggcgcagggctgaacggcgag
gttgacgtggaactgggcgatgatttcccggtgaacccgcagatcaagggcgcaatcaaa
agtctgggtggcgtggtctcggtcgaggagatctag
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