Pseudonocardia sp. DSM 110487: K1T35_04665
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Entry
K1T35_04665 CDS
T10356
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psds Pseudonocardia sp. DSM 110487
Pathway
psds03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K1T35_04665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psds03400
]
K1T35_04665 (mfd)
Enzymes [BR:
psds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1T35_04665 (mfd)
DNA repair and recombination proteins [BR:
psds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K1T35_04665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYN36607
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All DBs
Position
993267..996821
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AA seq
1184 aa
AA seq
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MAKLSGLLRSALSDSDLRAVVDAARDVRADEVPALSVEGPSALRPFLAAGFGMDEGDGGA
GRTVLVVTATDREAEDTGAAAADLLEPGAVAVLPSWETLPHERLSPRPDTVGRRLEIFRR
LGAPETAPRVVIAAARSLIQPIAPGLGTLDPVRLRVGDTHDFEALLVRLVELAYTRVEMV
TARGEFAVRGGIVDIFPPTAEHPVRVEFWGDEVSELRSFSVADQRSVAPVEELLAPGCRE
LLLTEPVRERAAALARTHDNNPQLRELLEHLAEGIPSEGMESLVPALVAGELELLTDLLP
AGSLVLLADPERIRTRSADLVRTGQEFLEASWFAAGVGGNSPIDVGASAYRDLAEVLEHA
SASGRSVVTLSPLVSGREDVLAPSVHEVESYRGDIDRALVDLRAHVATGGTAVLVVAGHG
TAQRSLEQLRDADVPAKHVEELVGVPEPGLVTVTCGRLTEGFATSALVLLTEADLTGNRA
AGTEPRKLASRRRNAVDLVTLQPGDYVVHSQHGIGRFVEMRERTVSGATREYLVLEYASS
KRGQPADRLFVPTDSLDEVSRYVGGEVPTLNKLGGADWAKTKGRARKAVRQIAAQLVQLY
AARQSSPGHAFGKDTPWQRELEDAFPYTETPDQLAAIEEVKRDMERSAPMDRVISGDVGF
GKTEIAVRAAFKAVQDGKQVAVLVPTTLLATQHLQTFADRMRAFPVTVKGLSRFTDNIEA
KQTIEGLADGTVDVVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEHITSLRTHVDVL
TLSATPIPRTLEMSLAGIREMSTIATPPEDRHPTLTYVGAYDDKQVTAAIRRELLRDGQV
FYVHNRVSTIDRAARKIRDLVPEARVAIAHGQMNEDLLERTVAGFWHNEYDVLVCTTIVE
NGLDISNANTLIVERSDTLGLSQLHQLRGRVGRGRERGYAYFLFPPEHPLTETAHDRLAT
IAQHSDLGSGAAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYIRLVGEAVAAFRKQAGA
GEGEEEEQLAEVRVDLPIDAHVPHDYVTGERLRLEVYRKIAEASDGAALDAIVEELTDRY
GEPPTPVRNLLAVAAFRQTCRTLGVGEVTVAGASIRIGPVELPDSAQMRLKRLHPKATYK
PAAKLVSVPKPTESGRVGAAPLRDVALLEWCTKLITDLLTPARV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagctctccggtttgctccgttccgccctttccgattccgatctgcgtgccgtt
gtcgacgccgcccgcgacgtccgtgccgacgaggtgccggcgctctccgtggagggaccg
tccgcgctgcgcccgttcctcgccgcggggttcggcatggacgaaggcgacggtggtgcg
ggccgcaccgtcctcgtcgtcaccgcaaccgaccgcgaggccgaggacaccggcgccgcg
gccgccgacctgctcgaaccaggcgccgtcgccgtgctcccgtcctgggagacgctgccg
cacgagcggctgtccccgcgccccgacacggtcgggaggcggctggagatcttccgccgg
ctcggcgcgccggagacggccccccgcgtcgtgatcgcggcggcgcgcagcctgatccag
ccgatcgcccccggcctgggcacgctcgacccggtccgccttcgggtcggcgacacccac
gacttcgaggcgctgctcgtccgcctggtcgagctggcctacacgcgcgtcgagatggtc
accgcccgcggtgagttcgccgtccgcggcgggatcgtcgacatcttcccgcccacggcc
gagcacccggtgcgcgtcgagttctggggcgacgaggtgagcgagctgcgctcgttctcc
gtggccgaccagcgttcggtcgcgcccgtcgaggagctgctcgcacccggctgccgggag
ctgctgctcaccgagcccgtgcgggagcgggccgccgcgctcgcgcgcacgcacgacaac
aacccacagctgcgggagctcctcgaacacctcgcagagggcatcccgagcgagggcatg
gagtcgctggtgccggcgctcgtcgcgggcgagctggagctgctcaccgacctgctcccg
gcagggtcgctcgtgctgctcgccgacccggagcgcatccgcacccgcagcgccgacctc
gtgcgcacgggacaggagttcctggaggcgtcctggttcgccgcgggcgtcggcggcaac
tcgcccatcgacgtcggcgcgtccgcgtaccgcgacctcgccgaggtgctggaacacgcg
tcggcgagcggccggtcggtcgtgacgctgagcccgctggtgtccggccgcgaggacgtc
ctcgcgccttccgtccacgaggtggagagctaccgcggcgacatcgaccgcgcgctggtc
gacctccgcgcccacgtcgccacgggtggcacagccgtgctcgtcgtcgcggggcacggc
accgcgcagcgctccctcgaacagctgcgcgacgccgacgtgccggccaagcacgtcgag
gagctggtcggcgtcccggagccgggcctggtcaccgtcacctgcgggcggctcaccgag
ggcttcgcaacgtccgcgctcgtgctgctcaccgaggccgacctcaccggcaaccgcgcg
gccggcaccgagccgcgcaagctcgcgtcgcggcggcgcaacgccgtcgacctcgtcacg
ctgcagcccggcgactacgtggtgcactcccagcacggcatcggccggttcgtcgagatg
cgcgagcggaccgtcagcggggccacccgtgagtacctggtgctggagtacgcgagctcc
aagcgcggccagcccgccgaccggctgttcgtccccaccgactcgctcgacgaggtcagc
cgctacgtcggcggcgaggtgcccacgctcaacaagctcggcggcgccgactgggccaag
acgaagggccgggcccgcaaggccgtccgacagatcgccgcgcagctcgtgcagctctac
gcggcgcgccagtcctcgcccggtcatgcgttcggcaaggacaccccctggcagcgcgag
ctggaggacgcgttcccctacaccgagacgcccgaccagctggcggcgatcgaggaggtc
aagcgcgacatggagcgctcggccccgatggaccgggtgatctccggcgacgtcgggttc
ggcaagaccgagatcgcggtgcgggccgcgttcaaggcggtgcaggacggcaagcaggtg
gcggtgctcgtgcccaccacgctgctcgccacccagcacctgcagacgttcgccgaccgg
atgcgcgcgttcccggtcacggtgaaggggctctcccggttcaccgacaacatcgaagcc
aagcagacgatcgagggcctcgccgacggcaccgtcgacgtcgtggtcggcacccaccgg
ctgctgcagaccggggtgcggtggaaggacctcggcctcgtgatcgtcgacgaggagcag
cgcttcggcgtggagcacaaggagcacatcacgtcgctgcgcacgcacgtcgacgtgctc
acgctgtcggccacgccgatcccgcgcacgctggagatgagcctcgccggtatccgtgag
atgtcgacgatcgccacgccgcccgaggatcgccatcccacgctcacttacgtcggcgcg
tacgacgacaagcaggtcaccgcggcgatccgacgggagctgctgcgcgacggccaggtg
ttctacgtccacaaccgggtctccacgatcgaccgcgccgcgcgcaagatccgcgatctc
gtgccggaggcgcgtgtcgcgatcgcccatggtcagatgaacgaggacctgctggaacgc
accgttgccgggttctggcacaacgagtacgacgtcctggtctgcacgacgatcgtggag
aacgggctggacatctcgaacgccaacaccttgatcgtcgaacggtccgacacgctcggg
ctctcgcagctgcaccagctgcgcggccgggtcgggcgcggccgcgagcgggggtacgcg
tacttcctgttcccgcccgagcacccgctcaccgagaccgcgcacgaccggctcgccacg
atcgcccagcactccgacctcggttccggcgccgccgtcgcgatgaaggacctggagatc
cgcggcgcgggcaacatcctcggtgccgagcaatcgggtcacatcgcgggcgtcgggttc
gacctctacatccgcctggtcggcgaggccgtcgcggcgttccgcaagcaggcgggggca
ggcgagggcgaggaggaggagcagctggccgaggtccgggtggacctcccgatcgacgcg
cacgtgccgcacgactacgtcaccggcgagcggctgcggctcgaggtctaccgcaagatc
gccgaggcctcggacggcgccgcgctggacgcgatcgtcgaggagctcaccgaccggtac
ggcgagccgcccaccccggtgcgcaacctgctcgccgtggcggcgttccggcagacctgc
cggacgttgggcgtcggagaggtgacggtggcaggcgcgagcatccggatcgggccggtc
gagctgcccgactccgcccagatgcggctcaagcgcctgcacccgaaggcgacgtacaag
ccggcggccaagctcgtgagcgttccgaagcccacggagagtggccgtgtcggtgcggcg
ccgctgcgcgacgttgctctgttggagtggtgcacgaagctcatcaccgacctgctcacc
cccgcgcgggtctga
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