Pseudonocardia sp. DSM 110487: K1T35_11820
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Entry
K1T35_11820 CDS
T10356
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psds Pseudonocardia sp. DSM 110487
Pathway
psds03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K1T35_11820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psds03400
]
K1T35_11820
Enzymes [BR:
psds01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
K1T35_11820
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K1T35_11820
DNA repair and recombination proteins [BR:
psds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K1T35_11820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_TFIIB
Zn_ribbon_recom
Zn_ribbon_NUD
DUF6487
Motif
Other DBs
NCBI-ProteinID:
QYN37862
LinkDB
All DBs
Position
2593929..2594735
Genome browser
AA seq
268 aa
AA seq
DB search
MPELPEVERARQAIEAALDREIRAVADGDEWVCRPHRPGDIAQVLVGGRLVAAHRRGKTM
WCDTAGADGEPGPRLGVHLGMGGWIVVESDDGEHVGGEPDRPEPDAVRPEWERFSITFAD
GGRLRLLDKRRLGRVRLEPDLDGLGPDALTISKAEFRERVGRGKAPVKARLQDQAVLAGV
GNLLADEVLWQARVAPRTPVDQLGDEALDRLHAAMRRTVEAAIANGGAHTGEVIPFRKAG
ATCPRCGAPMERGQVGGRATWWCSAEQS
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagctgccagaagtggaacgcgcacgccaggcgatcgaggctgcgctcgaccgc
gagatccgggccgtcgccgacggcgacgagtgggtctgccgcccgcaccggcccggtgac
atcgcgcaggtcctcgtcggcgggcggctcgtggccgcccaccggcggggcaagacgatg
tggtgcgacacggccggggcggacggcgagcccggtccgcggctcggcgtgcacctcggg
atgggcggctggatcgtcgtggagtccgacgacggcgagcacgtcggcggggagcccgac
cgccccgagccggacgcggtccggccggagtgggagcgcttctcgatcaccttcgccgac
ggcgggcggctgcggttgctcgacaagcgcaggctgggccgggtgcgcctcgaaccggac
ctcgacggactcggtccggacgccctgacgatctcgaaggccgagttccgggagcgcgtc
gggcgcggcaaggcgccggtgaaggcgcggttgcaggaccaggccgtgctggcgggggtg
ggcaacctcctcgccgacgaggtgctctggcaggcccgcgtcgcgccgcgcacgccggtc
gaccagctcggcgacgaggcgctcgaccggctgcacgctgcgatgcggcgcaccgtcgaa
gcggcgatcgcgaacggcggcgcgcacaccggggaggtgatcccgttccggaaggcgggc
gccacctgcccccgctgtggcgcgccgatggaacggggtcaggtcggcgggcgcgctacc
tggtggtgttcggcggagcagtcgtga
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