Pseudonocardia sp. DSM 110487: K1T35_15735
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Entry
K1T35_15735 CDS
T10356
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psds Pseudonocardia sp. DSM 110487
Pathway
psds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1T35_15735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psds03019
]
K1T35_15735
03009 Ribosome biogenesis [BR:
psds03009
]
K1T35_15735
Enzymes [BR:
psds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K1T35_15735
Messenger RNA biogenesis [BR:
psds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K1T35_15735
Ribosome biogenesis [BR:
psds03009
]
Prokaryotic type
rRNA helicases
K1T35_15735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
B12-binding
Cas3-like_C_2
MurB_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QYN40270
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All DBs
Position
3377099..3378844
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AA seq
581 aa
AA seq
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MPRSSDVPRSSDLPRFSDLPLRDELLREVEELGYQNPSPIQAQSIAPLVEGRDLLGQAAT
GTGKTAAFALPMLQRLAEQRPEQAKGDAPFGLVLTPTRELALQVAEAITRYGRGLGTRVV
TVYGGAPAGPQWRALQQGVDVVVATPGRAIDLMNRGALRLDGLETVVLDEADEMLDMGFV
EDIETLLDATPDTRQAVLFSATMPRRIETLAQKYLREPVTVRIRREAVPEGEAPKVRQTA
YLVPRTHTTAALGRVLEAERPTAAIVFCRTRLDVDAVTETLTARGLRAEALHGGMDQEHR
TRVVERLRSGRTELLVATDVAARGLDIDLLTHVVNHDVPQSSEAYVHRIGRVGRAGREGV
AITLVPPSKVHAMRAVERLTGQPIEFAPVPTAADLRASRLERTAAALRERLVDDLRNDLR
DEESGDGVREMLAGLAGEFDPVDVAAAAVRLLQAATGAPDDAEDIPVVTARSGERREPRS
RGGAAGTRPPKAGTTRLFVNAGRSSGVRPQDIVGALANESNLSGRDIGAIQIHERHALVE
IPEHAADDVLRSLRGGTTLKGRRTNIRRDRGFATAGRGRRD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
ctgccccgctcctcggacgtgccccgctcctcggatctgccccgcttctcggatctgcca
ctgcgcgacgagctgctgcgcgaggtcgaggagctgggctaccagaaccccagccccatc
caggcccagtcgatcgccccgctggtcgagggccgtgacctgctcgggcaggccgccacc
ggcaccggcaagaccgccgccttcgcgctcccgatgctccagcgcctcgcggaacagcgg
ccggagcaggcgaagggggacgcgccgttcgggctcgtcctcacccccactcgcgagctc
gcgctgcaggtggccgaggccatcacccgctacgggcgcggcctgggcacgcgcgtcgtc
actgtctacggcggcgcgccggccggcccgcagtggcgggccctgcagcagggcgtcgac
gtcgtcgtggccaccccgggccgcgcgatcgacctgatgaaccgcggcgccctgcgcctg
gacgggctcgagaccgttgtgctcgacgaggccgacgagatgctcgacatgggcttcgtc
gaggacatcgagacgctcctcgacgccaccccggacacccggcaggccgtgctgttctcg
gccaccatgccgcggcgcatcgagacgctcgcccagaagtacctgcgggagccggtcacg
gtccggatccgccgggaggccgtgcccgagggcgaggccccgaaggtgcgccagaccgcc
tacctcgttccccgcacccacaccacggccgcgctcgggcgcgtgctggaggcggagcgg
cccacggcggcgatcgtgttctgccgcacccggctcgacgtcgacgccgtcaccgagacg
ctcaccgcccgcggcctgcgcgccgaggcgctgcacggcggcatggaccaggagcaccgc
acgcgcgtggtcgagcggctgcgcagcgggcgcaccgagctgctcgtcgccaccgacgtc
gccgcgcgcggcctggacatcgacctgctcacgcacgtggtcaaccacgacgtgccgcag
tcgtccgaggcgtacgtgcaccggatcggccgggtgggccgcgccgggcgcgagggcgtg
gcgatcacgctcgtgccgccgtcgaaggtgcacgcgatgcgcgccgtcgaacggctcacc
gggcagccgatcgagttcgccccggtgccgacggccgccgacctgcgggcctcccgactc
gagcgcaccgccgccgcgctgcgcgagcggctcgtcgacgacctgcgcaacgatctgcgc
gacgaggagtccggcgacggggtccgcgagatgctggccgggctcgcgggagagttcgac
ccggtcgacgtcgccgcggcagcggtccggctgctgcaggcggccaccggcgctcccgac
gacgccgaggacatcccggtcgtgacagcacgctccggcgagcgcagggagccccgcagc
cgcggcggcgccgcgggcacccgcccgccgaaggccggcaccacgcgcctgttcgtcaac
gccggacggtcgagcggcgtgcgcccgcaggacatcgtgggcgcgctcgccaacgagtcg
aacctgtccggtcgcgacatcggcgcgatccagatccacgagcgccatgcgctggtggag
atccccgagcacgcggccgacgacgtcctgcgcagcctccgcggcggcaccacgttgaag
gggcggcgcacgaacatccgccgggaccgcggcttcgccaccgcgggccggggccgccgc
gactga
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