Pseudonocardia sp. DSM 110487: K1T35_24005
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Entry
K1T35_24005 CDS
T10356
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psds Pseudonocardia sp. DSM 110487
Pathway
psds03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K1T35_24005 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psds03400
]
K1T35_24005 (ligD)
Enzymes [BR:
psds01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K1T35_24005 (ligD)
DNA repair and recombination proteins [BR:
psds03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K1T35_24005 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
Mu-transpos_C_2
Motif
Other DBs
NCBI-ProteinID:
QYN31728
LinkDB
All DBs
Position
5129885..5131801
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AA seq
638 aa
AA seq
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MPLDEYRRKRDARRTPEPIPAADPAMEGPGHRFVIQEHHARRLHWDVRLERDGVLASWAV
PKGLPADPETVRLAVRTEDHPIEYLEFSGEIPAGEYGGGAMTIWDSGTYETEKWNAREVI
VRLTGERASGRFVFIRTDRDGGKDNWLLRRSDRDGARAPLPHDARPMLATPGELPAEGEW
WPQVGFGGRRVIVRADGGRVRITDADGDEVAAPSLRELGPSLGATQALLDGELVGGGEGA
YLWIGDVLHVDGRDTCPLPFRDRRALLERLPLDGPRWRLAPVFPGAGPEVLAAAKQQNLP
YVVAKDPDSPYEPGRTSTRWVQVPTGVAAPEPPPHRAAATGSRAGYGRASLSNPEKVLYP
LTGTTKADVLAYYLAVADAMLPHLRDRPVTLVRWPDGVERGSFFEKDVSRHAPRWLRTAR
VGTPGGRSENADFPLIDDAEGLAWAANLAALELHVPQWRVGPRGAQRLPDLVVFDLDPGE
GTTVVDCARVAERIAERLVDDGLVAYPRTSGGKGMQLYLPVTVSQSERTSEFAKALAEEL
ARESPGSVTAVMAKARRRGKVFVDWSQNNPYKTTIASYSLRGRARPTVATPVTWDEVRAC
RRPDDLVFTAADLPARIAEHGDLLAPLFTEPQRLPRRA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
gtgcccctcgacgagtaccgccgcaagcgcgacgcgaggcggacgcccgagccgatcccc
gccgccgacccggccatggagggccctggccaccgcttcgtcatccaggagcaccacgcg
cgccggctgcactgggacgtccggctggagcgcgacggcgtgctggcctcgtgggcggta
ccgaaggggctgcccgccgacccggagaccgtccggcttgccgtgcgcaccgaggaccat
cccatcgagtacctggagttctcgggcgagatcccggcgggtgagtacggcggcggcgcg
atgaccatctgggactccggcacctacgagaccgagaagtggaacgcgcgcgaggtcatc
gtccggctcaccggggagcgggcatcggggcggttcgtgttcatccgcacggaccgcgac
ggcggtaaggacaactggctgctgcgccgctccgaccgggacggtgcacgcgccccgctc
ccccacgacgcgcgcccgatgctcgcgacgcccggtgagctcccggccgagggcgagtgg
tggccgcaggtcgggttcggtggacggcgcgtgatcgtgcgggctgacggcgggcgcgtc
cggatcaccgacgccgatggcgacgaggtcgccgcgccgagtctgcgcgagctggggccg
tcgctcggtgcgacgcaggcgttgctggacggcgagctggtcggtggcggcgagggcgcg
tacctgtggatcggtgacgtgctgcacgtcgacggtcgcgacacgtgcccgctccccttc
cgggaccggcgggcgctgctggaacggctccccctcgacgggccgcgctggcggctcgcc
ccggtgttccccggagcagggcccgaggtgctggccgcggcgaagcagcagaacctgccc
tacgtcgtggcgaaggacccggactccccgtacgagccgggccgcaccagcacgcgctgg
gtgcaggtacccaccggggtcgcggcgccggagccgccgccgcaccgggcggcagccacg
gggtccagggcgggatacgggcgagcctcgctcagcaatcccgagaaggtgctctatccg
ctcaccggcaccacgaaggccgacgtcctggcctactacctcgcggtcgcggacgcgatg
ctgccgcatctgcgcgaccgtcccgtcacgctcgtgcgctggccggacggggtggagcgg
ggttcgttcttcgagaaggacgtctcccggcacgccccgcgctggctgcgtaccgcccgc
gtcggcacaccgggcggccggtcggagaacgccgacttcccgctgatcgacgacgccgag
ggcctcgcctgggccgcgaacctcgctgctctggagttgcacgtgccgcagtggcgggtg
gggccgaggggcgcccagcggctgccggacctcgtggtgttcgacctcgacccgggagag
ggcaccaccgtggtggactgcgcgcgggtggcggagcggatcgccgagcggctggtggac
gacggcctggtcgcgtacccgcgcaccagcggcgggaagggcatgcagctgtacctgccg
gtcaccgtctcgcagtcggaacggacgtcggagttcgccaaggcgctggccgaggaactg
gctcgcgagtcaccaggttcggtgacggctgtgatggcgaaggcgcggcggcgcgggaag
gtgttcgtcgactggagccagaacaacccgtacaagaccacgatcgcgagctactcgctg
cgggggagggcgcgtccgaccgtcgccacgccggtgacgtgggacgaggtgcgggcctgc
cgccgcccggacgatctcgtgttcaccgccgccgacctgcccgcccgcatcgcggagcac
ggcgacctgctcgccccgctgttcaccgaaccgcaacgcctcccccgtcgcgcgtga
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