Pseudonocardia sp. DSM 110487: K1T35_30130
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Entry
K1T35_30130 CDS
T10356
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psds Pseudonocardia sp. DSM 110487
Pathway
psds03030
DNA replication
psds03430
Mismatch repair
psds03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1T35_30130 (dnaE)
03430 Mismatch repair
K1T35_30130 (dnaE)
03440 Homologous recombination
K1T35_30130 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psds03032
]
K1T35_30130 (dnaE)
03400 DNA repair and recombination proteins [BR:
psds03400
]
K1T35_30130 (dnaE)
Enzymes [BR:
psds01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K1T35_30130 (dnaE)
DNA replication proteins [BR:
psds03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K1T35_30130 (dnaE)
DNA repair and recombination proteins [BR:
psds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K1T35_30130 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QYN32807
LinkDB
All DBs
Position
complement(6457923..6461477)
Genome browser
AA seq
1184 aa
AA seq
DB search
MAASSTDSFVHLHTHTEFSMLDGAARLDDLFKEAARMEMPALAMTDHGNVFGAYEFWRKA
NAHGVKPIIGMEGYLSPGSRHERKRATLGGQQVSDDNPGEMYTHMTLLAENTEGMHNLFR
LSSLASLEGYYYKPRMDRELLETYGKGIIATTGCPSGEVQRLLQQDRYDDAVQAASDYRD
IFGKDNFFCELMDHGIAIEKQVQEDLFRLKKQLDLPGLATNDLHYTYAEDAKPHEVLLCV
QTGKTLADPNRFKFDAQDFYLKSAAEMRAQWDPQFPEACDNTLLVAERVDVGFTEGQDLM
PRAPVPEGETEESWLVKEVERGLHKRFPNGVTERYRKQAEYEVGVIIQMGFPGYFLVTAD
LIQHAKSVGIRCGPGRGSAAGSLVAYVLGITDLDPIEHKLIFERFLNPERISMPDIDMDF
DERRRGEMIRYTTEKYGEDRIAQIITYSTIKAKAAIKDSARVLYGQPGYAVADRISKAMP
PAVMGKDIPLSGVFDPSHKRYSEATEVRALYEADPQVKEIIDTARGLEGLKRQWGVHAAG
VIMSSKPLIDVIPIQRREADGAIITQFDMGACETLGLLKMDFLGLRNLTIIDDALDNIEL
NGKPKLEIESVALDDPKTYELLGRGDTLGVFQLDGGPMRDLLRRMAPTEFDDISAVGALY
RPGPMGANAHNDYADRKNGRQEVTPIHPELAEPLKDILGETYGLIVYQEQVMAIAQKLAG
YTLGKADLLRRAMGKKKKEILDKEYEGFAQGMKDHGYSAAAVKTLWDILLPFSDYAFNRA
HSAAYGLVSYWTAYLKANYPAEYMAAVLTSVRDDKDKAAVYLAECRRMGITVLPPDVNDS
VRNFAPVGDDIRFGLGGIRNVGENVVDAIVAARKEKGAFTDFSDFLRKVDAVVCNKKVIE
SLIKAGAFDSLKHPRKGLLLVHADAIDAVMTTKKAASMGQFDLFGSMDGSGPSELDAVFD
VKVPDDEWDKKHRLAVEREMLGLYVSGHPLQGLEQVLLSKSDMSISSILEGSSDGRISDG
HQVTIGGILTGVNRRVNKNGEPWASAQLEDLAGGIEVLFFPRTYQVVGVDVAEDAIVLVK
ARVNKRDDRVSLIVADLAVPDLSSGAGGAGAPVKVSIRTELVTPQRVSKLKEVLSHHPGT
SEVHLNLLYGGKTTTWKLDDGLKVTHSSALMGDLKALLGPGCLG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagcagcaccgacagcttcgtccacctgcacacccacaccgagttctccatg
ctcgacggggcggcgcggctggacgacctgttcaaagaggccgcgcggatggagatgccc
gcgctggcgatgaccgaccacggcaacgtgttcggggcatacgagttctggcgcaaggcc
aacgcccacggcgtcaagccgatcatcgggatggagggctacctctcgccggggtcccgc
cacgagcgcaagcgcgccacgctgggcggccagcaggtcagcgacgacaacccgggcgag
atgtacacccacatgacgttgctggccgagaacacggaggggatgcacaacctcttccgg
ctctcgtcactggcgtcgctcgagggctactactacaagccccgcatggaccgggagctg
ctggagacctacggcaaggggatcatcgccaccacggggtgcccgtccggcgaggtgcag
cggctgctgcagcaggaccgctacgacgacgccgtccaggccgcgagcgactaccgcgac
atcttcggcaaggacaacttcttctgcgagctgatggaccacggcatcgcgatcgagaag
caggtccaggaggacctgttccggctgaagaagcagctcgacctgccgggcctggccacc
aacgacctgcactacacctacgccgaggacgccaagccgcacgaggtgctgctctgcgtg
cagaccggcaagaccctcgccgaccccaaccggttcaagttcgacgcacaggacttctac
ctcaagtccgccgccgagatgcgggcccagtgggacccgcagttccccgaggcctgcgac
aacacgctgctcgtcgccgagcgggtggacgtcgggttcaccgagggccaggacctcatg
ccgcgcgcacccgtccccgagggggagacggaggagagctggctggtcaaggaggtcgag
cgcgggctgcacaagcggttcccgaacggtgtcaccgagcggtaccgcaagcaggccgag
tacgaggtcggcgtcatcatccagatggggttccccggctacttcctggtcacggccgac
ctcatccagcacgccaagtccgtcggcatccggtgcggccccggccgtggctccgcggcg
ggctcgctggtggcgtacgtcctcgggatcaccgacctcgacccgatcgagcacaagctg
atcttcgagcggttcctgaaccccgagcgcatctcgatgcccgacatcgacatggacttc
gacgaacgtcggcgcggcgagatgatccgctacacgacggagaagtacggcgaggaccgc
atcgcgcagatcatcacgtactccacgatcaaggcgaaggccgcgatcaaggactcggcg
cgggtgctctacggccagcccggttacgcggtggccgaccgcatctccaaggcgatgccg
cccgccgtgatgggcaaggacatcccgctctccggcgtcttcgacccgtcccacaagcgc
tactcggaggccaccgaggtccgggcgctctacgaggccgacccgcaggtcaaggagatc
atcgacaccgcgcggggcctggagggcctcaagcggcagtggggtgtgcacgccgccggc
gtgatcatgtcgagcaagccgctgatcgacgtcatcccgatccagcgccgcgaggccgac
ggcgccatcatcacgcagttcgacatgggcgcctgcgagacgctcgggctgctgaagatg
gacttcctcggcctgcgcaacctcacgatcatcgacgacgccctggacaacatcgagctg
aacggcaagccgaagctcgagatcgagagcgtcgcgctcgacgacccgaagacctacgag
ctgctcggccgcggcgacacgctcggcgtgttccagctggacggcgggccgatgcgcgac
ctgctccgccggatggcgcccaccgagttcgacgacatctccgcggtcggcgcgctgtac
cggcccggcccgatgggcgccaatgcccacaacgactacgccgaccgcaagaacggccgg
caagaggtcacgcccatccacccggagctggcggagcccctcaaggacatcctcggcgag
acctacggcctgatcgtctatcaggaacaggtcatggcgatcgcccagaagctcgcgggc
tacacactcggcaaggccgacctgctgcgccgcgccatgggcaagaagaagaaggagatc
ctcgacaaggagtacgagggtttcgcccagggcatgaaggaccacggctactcggccgcc
gcggtcaagacgctgtgggacatcctgctgccgttctccgactacgcgttcaaccgcgcc
cactccgcggcgtacggcctggtctcgtactggacggcgtacctcaaggccaactacccg
gccgagtacatggccgcggtgctcacgtcggtccgcgacgacaaggacaaggccgccgtc
tacctggcggagtgccgccgcatgggcatcaccgtgctgccgccggacgtcaacgactcg
gtgcgcaacttcgcgcccgtcggcgacgacatccggttcggcctcggcggcatccgcaac
gtcggcgagaacgtcgtcgacgccatcgtggcggcccgcaaggagaagggggcgttcacc
gacttctccgatttcctgcgcaaggtcgacgcggtggtctgcaacaagaaggtcatcgag
tccctgatcaaggccggcgccttcgactcgctcaagcacccgcgcaagggcctgctgctc
gtgcacgccgatgccatcgacgcggtgatgaccaccaagaaggccgcctcgatggggcag
ttcgacctgttcgggtcgatggacggctcgggcccgtcggagctcgacgccgtgttcgat
gtgaaggtgcccgacgacgagtgggacaagaagcaccggctggccgtcgagcgggagatg
ctggggctctacgtctccggccacccgctgcaggggctggagcaggtgctgctgtccaag
tcggacatgtcgatctcgtcgatcctcgagggctcgtccgacggcaggatctccgacggc
caccaggtcacgatcggcggcatcctcaccggcgtgaaccggcgggtgaacaagaacggt
gagccgtgggcgtccgcgcagctggaggacctcgcaggcggcatcgaggtgctgttcttc
ccgcgcacgtaccaggtggtcggcgtcgacgtggccgaggacgcgatcgtgctggtcaag
gcaagggtcaacaagcgcgacgaccgcgtctcgctgatcgtcgccgacctcgcggtgccc
gacctctcgtcgggggccggcggtgcaggtgccccggtgaaggtgagcatccgcaccgag
ctcgtcaccccgcagcgggtgtcgaagctcaaggaggtcctctcccaccacccgggcacg
tcagaggtacacctcaacctcctctacggcggcaagaccaccacgtggaagctcgacgac
gggctcaaggtcacccactcgtcggcgctgatgggcgacctcaaggcgctgctgggccct
ggctgcctgggctga
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