Pseudonocardia sp. DSM 110487: K1T35_43375
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Entry
K1T35_43375 CDS
T10356
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psds Pseudonocardia sp. DSM 110487
Pathway
psds03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psds00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K1T35_43375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psds03021
]
K1T35_43375
03400 DNA repair and recombination proteins [BR:
psds03400
]
K1T35_43375
Enzymes [BR:
psds01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K1T35_43375
Transcription machinery [BR:
psds03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K1T35_43375
DNA repair and recombination proteins [BR:
psds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K1T35_43375
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QYN35111
LinkDB
All DBs
Position
complement(9208812..9212735)
Genome browser
AA seq
1307 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNKDLRHQDLSTLENEMSVERKRVENRRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWTSFTKLDVQQLIADEGL
YRELYDRYGDYFTGAMGAEAIQTLLQNFDIPAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQTTGNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKGMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPASGRPLAMPRLDMVTGLYHLSRQRDEAMGAGH
VYSSPAEAIMAYDRKALHLQAPIKIRLLNVVPPADVVTALEANGWQAGDPWLAETTLGRV
MFNELLPSDYPYVNEPLPKKRQATIINDLAERYSMTEVAQVLDRLKEAGFYWATRSGVTL
AISDVVVPPNKQQILDGYEAKADQINKRYQRGALSHQERNDEMVKIWTQATEEVARAMEE
NFPEDNPIPTIVQSGAAGNMTQVRQLAGMRGLVANPKGEYIPRPIKSNFREGLSVGEYFI
STHGTRKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGITMPVTEELADGRLI
PHRYLRTSVYARSSGEDVTGPDGQIIVRRGDDLGDPALDALVAAGVRQIKVRSALTCASG
TGICAMCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRISIEDGDRFWKIVLTPDDGGEEIVYEKLSKRQWLAMTS
DDGQERPLQDGDHVHVGQLLLEGTADPHEVLRVMGPREVQLHLVREVQKVYRTQSVDIHD
KHVEVIVRQMLRRVTIIDSGATEFLPGALAERAEFESENRRVVAEGGEPASGRPVLMGIT
KASLATESWLSAASFQETTKILTDAAINGKRDKLVGLKENVIIGKLIPAGTGINRYRNIQ
VQPTEEARAAAYALPSYDDGYYSPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacttcttcgacgagttgcgcatcggcctggccaccgctgaggacatc
cgccagtggtcgcatggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtcccacccgcgactgggagtgc
tactgcggcaagtacaagcgcgtccggttcaagggcatcatctgtgagcgctgtggcgtg
gaggtcacccgcgccaaggtgcggcgcgagcggatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggcgtcccgagccggctgggctacctgctcgacctg
gctcccaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacgtcggtgaac
aaggacctgcgccaccaggatctctccacgctcgagaacgagatgagcgtggagcgcaag
cgggtggagaaccgccgcgacgccgatctggaggcccgggcgcagaagctcgaggccgac
ctggccgagctggaggcggagggcgccaagagcgacgtccgccgcaaggtcaaggagggt
ggcgagcgcgagatgcgccagctccgcgaccgcgcccagcgcgagctggaccggctcgac
gagatctggacctcgttcaccaagctcgatgtccagcagctgatcgccgacgaagggctc
taccgcgagctctacgaccgctacggcgactacttcaccggggcgatgggcgccgaggcg
atccagaccctgctgcagaacttcgacatcccggccgaggccgagaacctgcgggagacc
atccgcagcggcaaggggcagaagaagctccgcgccctcaagcgcctcaaggtcgtcgcg
gcgttccagaccacgggcaacagcccgttgggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccgcctcaagaggctgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgtggccggccggtgaccggtccgggcaaccgtccgctcaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagggcatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcgcatggtggagcgtggccgc
tcgcaggtgtgggacgtgctcgaggaggtcatctccgagcacccggtgctgctcaaccgc
gcacccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcagtccgaggcccgggtgctgatgctc
tcgagcaacaacatcctgtcgccggcctcgggccgtccgctggccatgccccgcctggac
atggtcaccgggctgtaccacctgagccggcagcgcgacgaggccatgggcgcgggccac
gtgtactcctcgcccgccgaggcgatcatggcctacgaccggaaggcgctgcacctgcag
gccccgatcaagatccgcctcctcaacgtggtcccgcccgcggacgtcgtcaccgcgctc
gaggccaacggctggcaggcgggcgacccgtggctcgccgagaccactctcggccgggtc
atgttcaacgagctcctgccgtcggactacccgtacgtcaacgagccgctgccgaagaag
cgccaggccacgatcatcaacgacctggccgagcggtactcgatgaccgaggtcgcgcag
gtcctcgaccgcctcaaggaggcgggcttctactgggccacgcgctccggcgtcaccctc
gcgatctccgacgtcgtcgtgccgccgaacaagcagcagatcctcgacggctacgaggcc
aaggccgaccagatcaacaagcgctaccagcgcggtgcactgtcgcaccaggagcgcaac
gacgagatggtcaagatctggacccaggcgaccgaagaggttgcccgggccatggaggag
aacttccccgaggacaacccgatcccgacgatcgtgcagtcgggcgcggcgggcaacatg
acccaggtccggcagctcgccgggatgcgtggtctggtggccaacccgaagggcgagtac
atcccccgtccgatcaagtccaacttccgcgagggcctgtcggtgggtgagtacttcatc
tccacccacggcacccggaagggcctggccgacacggcgctgcgcaccgcggactcgggt
tacctcacccggcgtctggtggacgtgtcgcaggacgtcatcgtccgcgagcacgactgc
ggcaccgagcgcggcatcacgatgccggtcaccgaggagctggcggacgggcgcctgatc
ccgcaccgctacctgcgcacctcggtgtacgcgcggtcgtccggcgaggacgtcaccgga
ccggacggccagatcatcgtgcggcgcggcgacgacctgggcgacccggcgctcgacgcg
ctggtggccgcgggcgtgcggcagatcaaggtgcgcagcgccctgacctgcgcctcgggc
accggtatctgcgccatgtgctacggccgctcgatggccaccggcaagctggtggacgtc
ggcgaggccgtcggcatcgtggcggcgcagtcgatcggtgagccgggcacgcagctgacg
atgcgcacgttccaccagggcggcgtcgccggtgacgacatcaccaccggtctgccccgt
gtcacggagctgttcgaggctcgcgtgccgaagggcaaggcgccgatcgccgacgtggac
ggccggatctcgatcgaggacggcgaccgcttctggaagatcgtcctcacgccggacgac
ggcggcgaggagatcgtctacgagaagctgtcgaagcggcagtggctggcgatgacctcg
gacgatggccaggagcgcccgctgcaggacggcgaccacgtgcacgtgggccagctgctc
ctggagggcacggccgacccgcacgaggtgctgcgcgtcatgggaccgcgcgaggtgcag
ctgcacctggtgcgtgaggtgcagaaggtgtaccgcacgcagagcgtggacatccatgac
aagcacgtcgaggtgatcgtccggcagatgctccgccgggtcacgatcatcgactcgggt
gccaccgagttcctgcccggcgcgctcgccgagcgggccgagttcgagtcggagaaccgg
cgcgtggtggccgagggcggcgagccggcctcgggccgtccggtgctcatggggatcacg
aaggcctcgctggccacggagtcgtggctgtccgcggcttcgttccaggagaccacgaag
atcctcaccgatgccgcgatcaacggaaagcgcgacaagctcgtcgggctcaaggagaac
gtgatcatcggcaagctgatcccggcgggcaccggcatcaaccggtaccgcaacatccag
gtccagcccacggaggaggcccgcgcggccgcctacgcgctgccgagctacgacgacggc
tactacagccccgacgtgttcggcacgggcaccggtgccgcggtgccgctggacgactac
gacttcgggcgcgactaccggtag
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