Pseudomonas sp. Stari2: NH234_00330
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Entry
NH234_00330 CDS
T10554
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt02025
Biofilm formation - Pseudomonas aeruginosa
psdt03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
NH234_00330 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NH234_00330 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psdt02044
]
NH234_00330 (tssM)
Secretion system [BR:
psdt02044
]
Type VI secretion system
Imp/Vas secretion system core components
NH234_00330 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
SRC-1
Motif
Other DBs
NCBI-ProteinID:
XCY00380
LinkDB
All DBs
Position
complement(65170..68709)
Genome browser
AA seq
1179 aa
AA seq
DB search
MKKFFKKVGAFLRQTWVWTLLLVLFVALLVWFVGPLLAVDDYKFWESATSRLLTISVLFL
IWGLTMVFVSWRAGIRKKAVEETEDGQDRIRREELIDEEQKELKERFKDALKTLKTSSLY
RGRSERWRNDLPWYLLIGPQASGKTSLLDFSGLEFPINKIDRKLTRDTHGTRHCDWYFAD
HGVLIDTAGRYLTQPDAEVDGSAWTTLLELLRKRRRGRPLNGVLVTIPVETLTGGSEQDI
ETLARQVRARLQDVYQKLHVDVPVYLVLSKADKLLGFDEFFDQLTREESDQVLGTSFRKD
QVGTDVTVLRNEFEELLRRLNSQVIMRMHSERDTQRRGRILDFPHQMGQIGERLCLFVDM
AFTGNRYQRATQLRGFYLTSAPHLTQEMDSTTAGIGASLGMSAGVLPTLRSGRSRFIHHL
LSRVIFPEADLAGLDKRERSRIHWGQRALYVGALGALVLFGMLWAGGFSANYERLENLRN
LAQNWTQQRTALSPRDDAMGVLKTLDTSYAATQVFPKKGDAAYHERMGLYQGQDVNPVVK
EAYEHELEKQLLPRVATMLEGQIRANMKDREKLINSLRAYLMLNMKDRRDAAWLKDWIAA
DWSQRYTGNTAVQNGLNTHLERLLQQPFIYPLNEQLVTQARQILRSESLATVVYRMLREQ
ARNLPDYRFSQHLGPQGSLFIGTEYVIPGFYTQTGYQQYFSVQGASLVTDILRDNWVLGE
GAGISDMDLRRLMVELEQLYFRDYANYWSEAVGQVALPPISDAGEGAEQLAGLTSANSPV
LALLTEVRENTRFQAAPEPVDEAGDAADALAGQKGKLGKVGKLASAVADKASAMNVAKNL
PDTAKKSLQRRFEPLHKLLDDNNGPAADLTPAFAALNDLQLQMAGLARSSTPEQAAFELA
KTRMSGQRDALTNLRNASGRLPRPLSVWFNVLAEDSWRLVLNDAYQYLNGRYQSELYSVY
GKTINQRYPFSASSTSDVAISDFREFFRAQGTIDRFFDSYMRPFVSGDPGNYRMRSVDGR
SLPVSKVFLDQMAAALNIRQSFFSINPAEPTVQFKLEPYTLDPAVSRSEFKFGDKTMEYR
HGPILPMNFKWPTDAEDGRTSLVMDKMAGRPIGIEKNSGPWSLFRLFDLMQTEYLTGRDV
LVLKADVGGLRANYLLTSQRTPNPFDMGVMRTFRMPVQL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtttttcaagaaagtcggcgccttcctgcgccagacctgggtctggaccctg
ctgctggtgctgttcgtggcgctgctggtgtggttcgtcggcccgttgttggcggtagat
gactacaagttctgggagagcgcgacgtcgcgtctgctgaccatcagcgtgctgttcctg
atctggggcctgaccatggtcttcgtcagctggcgcgccggcattcgcaagaaagccgtc
gaagaaaccgaagacggccaggaccgtatccgccgcgaagagttgatcgacgaagagcag
aaagagttgaaggagcgtttcaaggacgccctgaaaaccctcaagacttcgagcctgtat
cgaggccgcagcgagcgctggcgcaatgacttgccgtggtacttgctgatcggcccgcag
gccagcggcaagaccagcctgctggacttctccgggctggaattcccgatcaacaagatt
gaccgcaagctgacccgtgacacccacggcacccgtcattgcgactggtacttcgccgat
cacggtgtactgatcgacaccgccggccgctacctgacccagccggatgcggaagtcgac
ggcagcgcctggaccaccctgctggagctgctgcgcaagcgtcgtcgcggtcgtccgctg
aacggcgtgctggtgaccattccggtggaaaccctgaccggtggcagcgaacaggacatc
gaaaccctggcccgccaggtgcgtgcgcgtctgcaagacgtctatcagaagctgcacgtc
gatgtgccggtgtatctggtgctgagcaaggccgacaagctgctgggcttcgacgagttc
ttcgatcaactgacccgcgaagaaagcgatcaggtgctgggtaccagtttccgcaaggat
caggtcggcaccgacgtgacggtactgcgcaacgagttcgaagagctgctgcgtcgcctc
aacagccaggtgatcatgcgcatgcactccgagcgcgacacccagcgccgtggccgcatc
ctcgacttcccgcatcagatggggcagatcggcgagcgtctgtgcctgttcgtcgacatg
gcgttcaccggcaaccgctaccagcgtgcgactcaattgcgtggcttctacctgaccagc
gctccgcatctgactcaggaaatggattcgaccaccgccggtatcggcgcgagtctgggc
atgagcgccggtgtgttgccgacgctgcgcagcggtcgttcgcgtttcatccatcacttg
cttagccgggtgattttccccgaggccgatctggccgggctggacaagcgcgaacgcagc
cgcatccactggggccagcgtgcgttgtacgtcggcgcactgggtgcgctggtgctgttc
ggcatgctctgggccggaggtttctcggccaactacgagcgtctggaaaacctgcgcaac
ctggcgcagaactggactcagcagcgtacggcactgtcgccgcgcgatgacgcgatgggc
gtgctgaaaaccctcgacaccagctacgccgcgactcaggtgttcccgaagaagggcgac
gctgcctaccacgaacggatgggtctgtatcagggccaggacgtcaatccggtggtcaag
gaggcttacgagcacgagcttgaaaagcaactgctgccgcgcgttgcaacgatgcttgaa
ggccagatccgcgccaacatgaaggaccgcgaaaagctgatcaacagcctgcgcgcgtac
ctgatgctgaacatgaaggatcgtcgcgacgcggcatggctcaaggactggatcgcggcg
gactggtcgcagcgttacaccggcaacaccgcagtgcagaacggtctgaacacgcacctc
gagcgtctgttgcagcagccgtttatctatccgctcaacgagcaactggtgacccaggcg
cgtcagatcctgcgcagcgagtcgctggcgaccgtggtttaccgcatgctccgcgagcag
gcgcgcaacctgccggattaccgtttcagccagcacctcgggccgcagggctcgctgttc
attggcactgaatacgtgattccgggcttctacacccagaccggctatcagcagtatttc
tcggtacaaggcgcatcgctggtgaccgacatcctgcgtgacaactgggtactgggcgaa
ggcgcgggcatcagcgacatggatttgcgtcgcctgatggtcgagctggagcaactgtac
ttccgcgactacgccaactactggagcgaggccgttggccaggtggcgctgccgccgatc
agcgatgccggtgaaggcgccgagcaactggcgggcctgacgtcagccaactcgccggtg
ctggcgctgctgactgaagtccgcgaaaacacccgcttccaggcggcccctgagccggtg
gatgaagccggtgacgccgccgatgcgctggcggggcagaagggcaaactgggcaaggtc
ggcaaacttgcttccgctgtcgcggacaaggcttcggccatgaacgtggcgaagaatctg
ccggacaccgccaagaagtccctgcaacgtcgcttcgaaccgctgcataagctgctcgac
gacaacaacggcccggccgctgacctgaccccggcattcgccgcgctcaacgacctgcaa
ctgcaaatggcgggcctcgcccgttccagcacgccggagcaagccgcgttcgaactggcc
aagacccgcatgagcggccagcgtgatgcgctgaccaacctgcgtaatgcgtcgggtcgt
ctgccgcgtccgctgagcgtgtggttcaacgtgctggccgaagactcgtggcgcctggtg
ctcaacgatgcctaccaatacctgaacggccgctatcagagcgagctgtacagcgtgtat
ggcaagaccatcaaccagcgttacccattcagcgcatcgagcaccagcgatgtggcgatc
agcgatttccgcgagttcttccgggctcaaggcaccatcgaccgcttcttcgacagctac
atgcgtccattcgtcagcggtgatccgggcaactaccggatgcgcagcgtcgacggtcgc
agtctgccggtgtccaaggtcttcctcgaccagatggcggcggcactgaacattcgccag
agcttcttctcgatcaacccggccgagccgaccgtgcagttcaagctggagccgtacacc
ctcgatccggcggtcagccgttccgagttcaagttcggcgacaagaccatggaataccgc
cacggtccgatcctgccgatgaacttcaaatggccgaccgatgctgaagacggtcgcacc
agcctcgtcatggacaagatggccggccgcccgatcggcatcgagaagaactccggtccg
tggtcgctgttccgtctgttcgacctgatgcagaccgagtacctgaccggtcgcgacgtg
ctggtgctcaaagccgatgtgggtggcctgcgcgccaactacctgctcaccagccagcgc
acgccgaatccgttcgacatgggcgtgatgcgtaccttccgtatgccggtgcagctctga
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