Pseudomonas sp. Stari2: NH234_00400
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Entry
NH234_00400 CDS
T10554
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NH234_00400 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psdt02044
]
NH234_00400 (tssC)
Secretion system [BR:
psdt02044
]
Type VI secretion system
Imp/Vas secretion system core components
NH234_00400 (tssC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
XCY00393
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All DBs
Position
complement(82520..83995)
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AA seq
491 aa
AA seq
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MSTSAAQQNAAENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVK
KAMVDRMIAEIDAKLSRQMDEILHHPDFQALESSWRGLQLLVDRTNFRENIKIEILNVSK
DDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYYMSPSSPDVKLMQYVSSV
ACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRTSEDSRYVGLTVP
RFLLRNPYDPEENPVKSFVYKENVANSHEHYLWGNTAYVFGTKLTDSFAKFRWCPNIIGP
QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSA
SSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLEL
ELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADF
TLSLVGKLDKE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagcactagcgcagcacaacagaacgccgcagaaaacggcgagtacagcatcctcgac
agcatcatcgccgaaacccgcctgacgccggacgacgaagcctacgacatcgccaagcgc
ggtgtgtcggcgttcatcgaagagctgctcaagccgcagaacaacggtgagccggtcaag
aaagccatggttgaccgcatgatcgccgagatcgatgccaagctcagccgtcagatggac
gaaatcctgcaccacccggacttccaggcgctggaatcgtcgtggcgtggcctgcagctg
ctggtcgaccgcaccaacttccgcgaaaacatcaagatcgaaatcctcaacgtctccaag
gacgacctgctggacgacttcgaagattcgccggaagtgatgcagtcgggcctgtacaag
cacatctacaccgctgaatacggccagttcggtggtcagccggttggcgcgatcatcgcc
aactactacatgtccccaagctcgccggacgtgaagctgatgcagtacgtgtccagcgta
gcctgcatgtcccacgcgccgttcatcgccgccgccggcccgaaattcttcggtctggaa
agcttcaccggtctgccggacctgaaggatctgaaagatcacttcgaaggcccgcaattc
gccaaatggcagagcttccgtacttcggaagactcccgctatgtcggcctgaccgttccg
cgtttcctgctgcgtaacccgtacgacccggaagaaaacccggtcaaatcgttcgtgtac
aaggaaaacgttgccaacagccacgagcactacctgtggggcaacaccgcttacgtgttc
ggcaccaagctgaccgacagcttcgccaagttccgctggtgcccgaacatcatcggccca
cagagcggcggcgcggttgaagacctgcctctgcaccacttcgaaagcatgggcgaaatc
gaaaccaagattcctaccgaggttctggtttccgaccgtcgtgaatacgaactggccgag
gaaggcttcatctccctgaccatgcgcaaaggctccgacaacgcggcgttcttctccgca
agctcggtgcagaagccgaagttcttcggcatcagcgcagaaggcaaggctgcagagctg
aactacaagctcggcacccaactgccgtacatgatgatcgtcaaccgcctggctcactac
ctgaaagtgctgcagcgcgagcaactcggttcgtggaaagagcgtaccgacctcgagctg
gaactgaacaagtggatccgccagtacgtggccgaccaggaaaacccgagcgccgaagtg
cgtggccgtcgtccgctgcgcgctgcgcaagtgatcgtcagcgacgttgaaggcgagccg
ggctggtaccgcgtcagcctgaacgtgcgcccgcacttcaagtacatgggtgccgatttc
accctgtcgctggttggcaagctggacaaagagtaa
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