Pseudomonas sp. Stari2: NH234_02290
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Entry
NH234_02290 CDS
T10554
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH234_02290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psdt03019
]
NH234_02290
03400 DNA repair and recombination proteins [BR:
psdt03400
]
NH234_02290
Enzymes [BR:
psdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NH234_02290
Messenger RNA biogenesis [BR:
psdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NH234_02290
DNA repair and recombination proteins [BR:
psdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NH234_02290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XCY00754
LinkDB
All DBs
Position
515823..517751
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AA seq
642 aa
AA seq
DB search
MHNTLEQVFGYPQFRPGQEAAISAVLAGRSAAAIFPTGSGKSICYQMPALLLPHLTLVVS
PLLALMQDQLEFLRRHGISAGSIDSAQSREDANNVMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQTLLLTATATPKVIADM
QAKFAIAAEDVVTTGFYRPNLNLLVEPVRGEDKRRRLVQWMAERTGQPSIVYVTQQKTAE
HLAEHLGRNGIQAEAYHAGLPHEQREAIQKRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDGIRHVLDELQ
AAAPEGQWEFLLGPLADQSNIRALPLKTLLVQLELRGLIAPRYAYYAEYRFKYLLEPEAL
LERFEGERRDFVAAIIQTSSRARTWATVNFEAMYSQYSAERNRVVKALDYFQEKGWVELE
SKQMTEVYNVLHSAFDSQVLSSELHEYFSRHEQAEVARIHAMLELFATERCLGYRLAEYF
GDHNAPEQCGHCSVCHGQIARLPAPPELPALVDKSFPALCSDFIHRHEQQTGSAPSAERL
TRFLCGISVPLFTKLKARTISGYAALEEYSYADVRAWAQAHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggaacaggttttcggttatccacaatttcgacccggtcaggaagcg
gcaatcagcgccgtgctggccgggcgctcggcggcggcgatctttcccaccgggtcggga
aagtccatttgctaccagatgccggctctcctgctgccacacctgacgctggtggtctcg
ccgttgctggcgctgatgcaggaccagcttgagttcttgcggcgccacggcatttcggcg
gggagcatcgactcggcacaaagccgcgaagacgccaataatgtgatggcccgcgcccgt
tcgggcgaactgaagatcctgatgatttccgttgagcgtctgaaaaacgagcgctttcga
aattttttgcagcaggtgccgatctcgctgctggtggtggatgaggcgcactgcatctcc
gaatggggccacaacttccggcccgactatctcaagctgccggactaccagcgccagttc
aacatcccgcagaccctgctgctgactgccaccgcaacgccgaaagtcattgccgacatg
caggcgaagttcgccatcgccgccgaagacgtagtgacaaccggtttctatcgacccaac
ctcaacctgctggtggagccggtgcgcggcgaggacaagcgtcgacggctggtgcagtgg
atggccgagcgaacgggccagccgagcatcgtctacgtcacccagcagaaaaccgccgaa
cacctcgccgagcatctggggcgcaatggcatccaggccgaggcgtaccatgccgggctg
ccccacgaacaacgggaagcgatccagaagcgcttcatgggcgggcagtccaattgcatc
gtcgccaccatcgcgttcggcatgggcatcgacaaaagcgacatccgcaacgtggtgcat
ttcgacctgcccaaatccatcgaaaactacagtcaggaaatcggccgtgccgggcgagac
gggcaaccctccgactgcctggtgctggccaaccgcgacagcctcaatgtgctggaaaac
ttcgtctacggcgacacgccggagcgcgatggcattcgccacgtgctggacgagttgcag
gccgctgcgcctgaaggtcagtgggagtttttgctcgggccgctggcggatcagagcaat
atccgtgcgctgccgttgaagacgttgctggtgcaactggagctgcgagggctgattgcc
ccgcgctacgcgtactacgccgaatatcgtttcaaatacctgctggaacccgaggcgttg
cttgagcgtttcgagggcgagcgcagggatttcgtcgcagcgatcatccagacttcgagc
cgcgcacggacctgggccacggtgaatttcgaggcgatgtattcgcagtattcggccgag
cgcaaccgcgtggtgaaggcgctggattacttccaggaaaagggctgggtcgagctggaa
agcaaacagatgaccgaggtctacaacgttcttcacagtgccttcgacagccaggtcttg
agtagcgagttgcatgaatacttctcccgtcacgaacaggccgaagtggcgcggattcac
gcgatgctcgaattgttcgccaccgagcgatgcctgggctatcgactggccgaatacttc
ggtgatcacaacgcccccgagcagtgcgggcattgctcggtgtgtcacgggcagattgcc
cggttgccggcgcctccggaactgccggcgcttgtggataaaagttttccggcgttgtgc
agcgactttatccacaggcacgagcaacagaccggcagtgcgccttcggcggagcggctg
acgcgctttctgtgcgggatcagcgtgccgctgttcaccaagctaaaggcacggaccatt
tccgggtatgcggcgctggaggagtattcctacgcggacgtgcgggcctgggctcaggcg
catctctga
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