Pseudomonas sp. Stari2: NH234_07005
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Entry
NH234_07005 CDS
T10554
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
psdt Pseudomonas sp. Stari2
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psdt03009
]
NH234_07005 (rimO)
Enzymes [BR:
psdt01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NH234_07005 (rimO)
Ribosome biogenesis [BR:
psdt03009
]
Prokaryotic type
ribosomal protein modification factors
NH234_07005 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Matrix_Paramyxo_N
Motif
Other DBs
NCBI-ProteinID:
XCY01657
LinkDB
All DBs
Position
complement(1553868..1555205)
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AA seq
445 aa
AA seq
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MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVLAVTGPQQYEQVVNAVHEVVP
PKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD
LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLNLDIVPDDVK
QDRWERFMAHQQEISSARLQMRIGREIEVLVDEVDEQGAVGRCFFDAPEIDGNVFIDNGS
NLKPGDKVWCKVTDADEYDLWAEQI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactcctgcgccggccaatccaaaggttggcttcgtatctctgggttgccca
aaagcactggtcgactccgagcgcatcctgacccagctgcgcatggaaggctatgacgtg
gtgtccacctatcaggacgccgacgtggtcgtggtcaacacctgtggcttcatcgactcg
gccaaggccgaatccctggaagtcatcggtgaagcgatcaaggaaaacggcaaggtcatc
gtgaccggttgcatgggcgtggaagaaggcaacatccgtgacgtgcacccgagcgtgctg
gccgtcaccggtccgcagcagtacgagcaagtggtcaacgcggtgcacgaagtcgtgccg
ccgaaacaggatcacaaccctctgatcgacctggtgccgccgcaaggcatcaagctgacg
ccgcgccactacgcgtacctgaagatttccgaaggctgcaaccacagctgcagcttctgc
atcatcccgtcgatgcgcggcaaactggtcagccgcccggttggcgacgtgctcgacgaa
gcccagcgtctggtcaaatccggcgtcaaagagctgctggtgatctcccaagacaccagc
gcctacggcgttgacgtcaagtaccgcaccggtttctggaacggcgcgccagtgaaaacc
cgcatgaccgaactgtgcgaagcgctgagcaccctcggcgtctgggtccgtctgcactac
gtttacccgtacccgcacgtcgacgagctgatcccgctgatggccgccggcaagatcctg
ccgtacctggacatcccgttccaacatgccagcccgaaagtcctcaagtcgatgaaacgc
ccggcgttcgaagacaagaccctggcgcgaatcaagaactggcgcgagatctgcccggac
ctgatcatccgttcgaccttcatcgtcggtttccccggcgaaaccgaagaagacttccag
tacctgctggactggctgaccgaagcccagctcgaccgcgtcggctgcttccagtactcg
ccggtcgaaggcgcgccggccaatgacctgaacctcgacatcgtcccggacgacgtcaag
caggatcgctgggagcgcttcatggcgcaccagcaggaaatcagctcggcccgtctgcaa
atgcgcatcggccgtgaaatcgaagtgctggtggacgaagtcgacgagcaaggcgcggtc
ggccgctgcttcttcgatgccccggaaatcgacggcaacgtgttcatcgacaacggcagc
aacctcaagccgggcgacaaggtctggtgcaaggtgaccgacgccgacgaatacgacctc
tgggccgaacagatctaa
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