Pseudomonas sp. Stari2: NH234_08655
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Entry
NH234_08655 CDS
T10554
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH234_08655 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psdt03019
]
NH234_08655 (recQ)
03400 DNA repair and recombination proteins [BR:
psdt03400
]
NH234_08655 (recQ)
Enzymes [BR:
psdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NH234_08655 (recQ)
Messenger RNA biogenesis [BR:
psdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NH234_08655 (recQ)
DNA repair and recombination proteins [BR:
psdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NH234_08655 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HTH_40
HTH_23
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
XCY01978
LinkDB
All DBs
Position
1887481..1889610
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLANRIKRGEVKMLYLAPERLVQ
PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPDVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VEEVAAFLTEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQALLAYFDEDMPEPCGHCDNCTDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHQHLSVYGVGKALSESEWRSLFRQLVARGLADVDHE
GYGGLRLSDTCRPLLKGEVSLELRRDLKPQVSAKSGSKSPASQLVRGEEREQWEALRALR
RKLAEEHGVPPYVIFPDSTLLEMLRSQPTSLADMARVSGVGARKLERYGEAFLEVLGGEA
EAPKVVADVRHELITLARAGMTPLQISGQLQCSEKNVYTMLAEAIGKQQLSLEQALDLPE
DLMGEVQDAFLDGEGELPSVAEVAELFAGRVPEGVLYCVRAALQSEFEM
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgtcagggtgcaatcattgagcgcgtggccagtggcggtgatgcccttgtcctgatgccg
accggcggcggcaagtccctgtgcttccaggtaccggcgctgctgcgggacggcctggcg
gtggtggtttcgccgctgatcgcgttgatggacgatcaggtcgccaccctcgaagagctg
ggcgtggcggctgccgcgttgaattccacgttgagcgccgaacagcagcgcgatctcgcc
aaccggatcaagcgtggcgaagtgaagatgctctatctggcgccggagcgtctggtgcag
ccgcgcatgttgtcgttcctgcaaggtttgaacatcgcgctgttcgccatcgacgaagcg
cactgcgtatcgcaatggggccatgacttccgtccggaatatctgcaactggggcagttg
gcggaaatgtttcccgatgtaccgcgcatcgccctgaccgccaccgccgacaagcgcacc
cgggaagaaatcgtcacccgcctgcatttgcagaacgccgagcgtttcctgtcgagcttc
gaccggccgaacatcttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgtttcttgccgagcgacgcagcgacgctggcatcgtttactgcctgtcgcgcaagaag
gtggaggaggtggccgcgtttctcaccgaacagggcttcccggcgctgccgtatcacgcc
ggcctgcccaacgatctgcgcgcctatcaccagaaacgcttcctcaacgaggaaggcctg
atcatggtcgccaccgtggccttcggcatgggcatcgacaaacccaacgtgcgtttcgtc
gctcacctcgacctgccgaaatccctggaagcctattaccaggaaactggacgtggcggc
cgtgacggcctcccggcggacgcgtggatggcctatggtctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcgccataagcgtctggagcagcacaag
ctcgacgcgatgctctcgctctgcgaagaaacacgctgccgccgtcaggcgttgctggcg
tacttcgacgaagacatgcccgagccctgcgggcattgcgataactgcaccgacggcgtg
cagacctgggacgccaccgagcctgcgcgtcaggcgctgtcggcgatctatcgcaccggc
cagcgttacggcgtcggccatctggtggacgtattgctgggcaaggacaacgaaaaggtc
cgcagcttcggccatcaacacttgtcggtgtacggcgtcggcaaggcgttgagcgagagc
gaatggcgctcgctgtttcgccagttggttgctcgcggtctggccgatgtcgatcacgaa
ggctacggcgggctgcgcctgagcgatacctgccggccgctgctcaagggcgaagtgagc
ctggagttgcgccgcgacctcaagccgcaagtcagcgccaagagcggcagcaagagcccg
gccagccaactggtgcggggtgaagagcgcgaacagtgggaagcgttgcgtgccctgcgg
cgcaaactggcggaagaacacggcgtgccgccttatgtcattttccccgactcgaccctg
ctggaaatgctccgcagccagccgacctcgctggcggacatggcccgggtcagcggcgtc
ggcgcgcgcaagctggagcgttacggcgaggccttcctcgaagtactcggcggcgaagcc
gaggcgccgaaagtggtggccgacgtacgtcacgagctgatcaccctggcccgtgccggc
atgacaccgctgcagatttccggtcagttgcagtgctcggaaaagaacgtttacaccatg
ctcgccgaagccatcggcaagcagcaattgtcgctggaacaggcgcttgatttgccagag
gacctgatgggcgaagtccaggacgcgttcctcgacggcgagggcgagttgccgtcggtc
gccgaagtggcggagctgtttgccggtcgcgtaccggaaggtgtgctgtattgcgtaagg
gctgcgctgcaatcggaattcgagatgtga
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