Pseudomonas sp. Stari2: NH234_13930
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Entry
NH234_13930 CDS
T10554
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NH234_13930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdt03021
]
NH234_13930
Transcription machinery [BR:
psdt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NH234_13930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
Rv2175c_wHTH
HTH_24
HTH_AsnC-type
HTH_31
MarR_2
DUF4274
HTH_11
DUF7646
HTH_28
HTH_3
Motif
Other DBs
NCBI-ProteinID:
XCY02975
LinkDB
All DBs
Position
3089856..3090362
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AA seq
168 aa
AA seq
DB search
MGSHNPHYQVIGQMFQKDYRWLCAAVSRTLGCPHSAQDIASETFLRVLALPDPLAIREPR
ALLTTIARRLVYEGWRRQDLERAYLQSLALAPEPVHPSPEERALVIETLLAVDRLLNGLS
AKAKAAFLYHQLDGLTYSEIGERLGVSTSRVQQYMVEAFKRCYQAMQV
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atggggagtcacaacccgcattaccaggtcatcgggcaaatgttccaaaaggactaccga
tggttatgcgccgcagtcagccgtaccctcggctgcccgcacagcgcacaggacattgct
tcggaaacctttctgcgggtgctggcattgcctgacccgctggcgattcgcgaaccccgc
gcgctgttgactacgattgcgcgacggttggtctatgaaggctggcgccgacaggatctc
gagcgcgcctatctgcaaagcctggccctggcgccagagccggtgcatccgtcacccgaa
gaacgggcgttggtgatcgaaacgttgctggcggtggatcgcttgctcaacggtctgtcg
gccaaggccaaggctgcgtttctctatcaccagctcgatggcctgacctatagcgaaatc
ggcgaacgccttggcgtctccaccagtcgcgtgcagcagtacatggtcgaagccttcaaa
cgttgctatcaggcgatgcaggtatga
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