Pseudomonas sp. Stari2: NH234_14310
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Entry
NH234_14310 CDS
T10554
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psdt Pseudomonas sp. Stari2
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psdt03032
]
NH234_14310
03400 DNA repair and recombination proteins [BR:
psdt03400
]
NH234_14310
Enzymes [BR:
psdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NH234_14310
DNA replication proteins [BR:
psdt03032
]
Prokaryotic type
DNA Topoisomerases
NH234_14310
DNA repair and recombination proteins [BR:
psdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NH234_14310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
XCX97553
LinkDB
All DBs
Position
complement(3187049..3188077)
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AA seq
342 aa
AA seq
DB search
MPDTALTDVLPSNLHYVDDTQPGLTRKKLRGKFCYFDATGQRIRDPDEIKRINALAVPPA
YTDVWICADSRGHLQATGRDARGRKQYRYHPRWREVRDADKYSRLREFGMALPKLRKQLE
VLLDAPGFSRDKVMATVITLLDATLIRVGNTQYARDNKSYGLTTLRNRHVEINGSAILFQ
FRGKSGIEHQITVKDRRLARIIKRCLEIPGQNLFQYVDEHGERHTVSSSDVNSYLQTLTG
ADFTAKDYRTWAGSALALSVLRELQWESEAEAKRHVVEMVKGVARQLGNTPAVCRKCYIH
PAVVEHFMLGALADLPKPRIRKGLRKEEVALALFLERMSDMA
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatacagcgctgaccgatgtgttgccttcgaacctgcattacgtcgatgacacc
cagccgggactcacccgcaaaaagctgcgcggcaagttctgctacttcgacgcaactggc
cagcgcatccgcgatcctgacgaaatcaaacgcatcaatgcgttggctgtgccgccggcc
tacaccgatgtgtggatctgcgcggactctcgcggccatctgcaagccaccggccgcgat
gctcgcgggcgcaaacaataccgctatcacccacgctggcgcgaagtccgcgatgccgac
aaatactcgcgactgcgcgagttcggcatggcgctgccgaagctgcgcaaacaactggaa
gtgctgctggacgcaccggggttcagccgcgacaaagtcatggccacggtgattactttg
cttgatgccacgctgatccgcgtcggcaatactcaatacgcacgagacaataaatcctat
gggctgactactctgcgcaatcggcatgtcgagatcaatggcagcgcgatcctgttccag
tttcgcggaaagagcggtatcgagcatcaaatcaccgtgaaagaccggcgcctggcgcgg
attatcaagcgctgcctggaaatcccggggcagaacctgttccagtacgtggatgaacac
ggtgagcggcacaccgtcagttcctccgacgtcaactcttacctgcaaaccctgaccggc
gcggacttcaccgccaaggactaccggacctgggctggcagcgccctcgccctgtcggtg
ctgcgggagttgcaatgggaatcggaagccgaagccaagcggcatgtggtggagatggtc
aaaggtgtagcgcgacaactgggcaatacgccagcagtgtgccgcaaatgctatatccac
ccggccgtggtggagcatttcatgctgggcgcgctggcggatctgccaaagccgaggatc
cgcaaaggtctgcgcaaggaggaagtggccctggcgttattccttgagcgcatgtctgac
atggcttga
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