KEGG   Pseudomonas sp. Stari2: NH234_16005
Entry
NH234_16005       CDS       T10554                                 
Name
(GenBank) multidrug efflux RND transporter permease subunit
  KO
K18296  multidrug efflux pump
Organism
psdt  Pseudomonas sp. Stari2
Module
psdt_M00639  Multidrug resistance, efflux pump MexCD-OprJ
Brite
KEGG Orthology (KO) [BR:psdt00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:psdt02000]
    NH234_16005
   01504 Antimicrobial resistance genes [BR:psdt01504]
    NH234_16005
Transporters [BR:psdt02000]
 Other transporters
  Electrochemical potential-driven transporters [TC:2]
   NH234_16005
Antimicrobial resistance genes [BR:psdt01504]
 Gene sets
  Multipdrug resistance modules
   Multidrug resistance, efflux pump MexCD-OprJ [MD:M00639]
    NH234_16005
SSDB
Motif
Pfam: ACR_tran MMPL SecD_SecF_C
Other DBs
NCBI-ProteinID: XCX97869
LinkDB
Position
complement(3569267..3572398)
AA seq 1043 aa
MSKFFIKRPNFAWVVALFISLAGLLVIPMLPVAQYPDVAPPQIKVTATYPGASAKVLVDS
VTSVIEESLNGAKNLLYFESTNNSNGIAEIAVTFQPGTDPQLAQVDVQNRLKKAESRMPQ
AVLTQGLEVEQASAGFLLIYALNYKEGSQHTDTTALGDYAARNINNELRRVPGVGKLQFF
SSEAAMRIWLDPQKLVGYGLSIDDVSTAIRGQNVQVPAGSFGSTPSNSQQELTATLAVKG
TLDNPQEFARIVLRANEDGSTVKLGDVARVEIGQESYNFNSRLNGKPAVAAAIQLSPGAN
AIQTATAVKERLAELSAYFPDDVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLF
LQNIRYTLIPSIVVPVCLLGTLVMMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVER
IMAEEGLSPVDATIKAMGQVSGAIIGITLVLSAVFMPLAFMSGSVGVIYQQFSVSLAVSI
LFSGFLALTFTPALCATLLKPIPQGHHEKRGFFGAFNRGFARLTERYSILNNGLVARAGR
MMLVYVGIIAMLGYFYLRLPESFVPVEDQGYMIVDVQLPPGATRTRTEATGEQLERYLAS
RDAVQSMFLVSGFSFSGMGDNAALAFPVFKDWSLRGEDQSAMVEVMALNEQFAVTNDGAV
MAVPPPPIDGLGNSGGFALRLQDRGGLGREALLAARDQVLGQANGNSKILYAMMEGLAES
PQLRVVIDRDKARTLGVSFESISSALSAAFGSEVINDFTNSGRQQRVVVQAEQGDRMTPE
SVLKLYVHNSAGNLVPLSAFVTTHWEEGPVQLVRYNGYPSIRIVGDAGPGYSTGEAMAEM
ERIAAQLPAGFSYEWTGLSYQEKVSSGQATQLFALAILVVFLLLVALYESWAIPLTVMLI
VPIGAIGAVLAVMVAGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLRDAAI
EAARLRFRPIVMTSMAFILGVVPLALATGAGAASQRAIGTGVIGGMLSATLLGVLFVPIC
FVWVLSRLRSKPASVERPALVQE
NT seq 3132 nt   +upstreamnt  +downstreamnt
atgtccaagtttttcatcaaacgcccgaacttcgcctgggtggtggcgttgttcatctca
ctagccggcctgctggtcattccgatgctgccggtggcgcagtatcccgatgttgcgccg
ccgcaaatcaaggtcacggccacttatcccggggcctcggcgaaagtgctggtggactcg
gtcaccagcgtgatcgaagagtcgctcaacggtgccaagaacctgctgtatttcgagtcg
accaacaactccaacggcatcgccgaaattgcggtgacgttccagccgggcactgatccg
cagctcgctcaggtcgacgtgcaaaaccgcctgaaaaaggctgagtcgcgcatgccgcaa
gccgtgctgacccaaggcctggaggtggagcaggccagcgccggtttcctgctgatctat
gcgctcaactataaggaaggctcccagcacaccgacacaaccgcgctgggcgactacgcc
gcgcgcaacatcaacaacgaactgcgccgggtgccgggcgtcggcaagctgcaattcttc
tcatctgaagctgcgatgcgcatctggctcgacccgcagaaactggtgggttacgggctg
tccatcgacgacgtgagcaccgcgattcgcgggcaaaacgtacaggtgccggccggcagc
ttcggcagcacgccgagcaacagccagcaggaactgaccgcgaccctggcggtgaaaggc
acgctggataatccgcaagaatttgcccgcatcgttctgcgtgccaacgaggacggctcg
acggtcaaactaggcgacgtcgcccgcgtggaaatcggccaggaaagctacaacttcaac
tcgcgcctgaacggcaaaccggccgtggccgccgcgatccagttgtcccccggcgccaac
gcgattcagactgcgaccgccgtcaaggaacgcctggccgaactgtcggcgtacttcccg
gacgacgttgaatactccgttccctacgacacttcgcgtttcgtcgacgtcgccatcgag
aaggtgatccacaccctgatcgaggcgatggtgctggtattcctggtgatgttcctgttc
ctgcagaacatccgctacacgctgattccgtcgattgtggtgccggtgtgtctcctcggc
acgttggtgatgatgtacctgctgggcttctcggtgaacatgatgaccatgttcggcatg
gtgctcgccatcggcattctggtggacgacgccatcgtggtggtggagaacgtcgagcgg
attatggcggaggaagggttgtcgccagttgacgccacgatcaaggccatggggcaggta
tccggtgcgatcatcggtatcaccctggtgctgtcggcagtgttcatgccgttggcgttc
atgtccggttcggtgggtgtgatctaccagcagttctccgtgtcgctggcggtgtcgatc
ctgttctcgggcttcctcgcgctgacgttcacgccggctctgtgtgccacgctgctcaag
ccgattccgcaaggacaccatgaaaaacgcggtttcttcggcgccttcaaccgtggtttc
gcgcggctcaccgagcgttactcgatcctcaacaacggcctggtcgctcgtgcggggcga
atgatgctggtgtacgtgggcattatcgcgatgctcggctacttctacctgcgtttgccg
gagtcgtttgtgccggtggaagaccagggctacatgatcgtcgatgtccagttgccaccg
ggcgcgacccgtacccgtaccgaagcgaccggcgaacagcttgagcgctatctcgcctcc
cgtgatgcggtgcagtcgatgttcctggtctcgggtttcagcttctccgggatgggcgat
aacgcggcgctggcattcccggtgttcaaggactggtcgctgcgtggcgaagatcaatcg
gcgatggtcgaggtcatggcgctgaacgaacaatttgccgtgaccaacgacggcgccgtg
atggcggtgccgccgccaccgatcgacggtctgggcaactccggcggtttcgcgctgcgt
ctgcaggatcgcggcggactgggccgcgaagccttgctcgccgcccgtgaccaggtgctc
ggtcaggccaacggcaactcgaaaatcctctacgccatgatggaaggcttggccgaatcg
ccgcaattgcgcgtggtgatcgaccgtgacaaggcccgtaccttgggcgtgagtttcgag
tcgatcagcagtgcgttgtccgccgcgttcggttccgaagtgatcaacgacttcaccaac
tctggccgtcagcaacgtgtggtggtgcaggccgagcagggcgaccggatgaccccggaa
agcgtgctcaaactgtacgtgcacaacagcgccggcaatctggtgccgctgagcgccttc
gtcaccacccactgggaagaaggcccggtgcaactggtgcgctacaacggatatccgtcg
atccgcatcgtcggtgacgccgggccgggctacagcaccggtgaagccatggcggaaatg
gaacgaatcgccgcgcaattgccggcaggtttcagctacgagtggacggggctgtcgtat
caggaaaaggtctccagcggtcaggcgacgcaattgttcgcgctggcgattctggtggtg
ttcctgttgctggtggcgctctacgagagttgggcgattccgttgacggtgatgctgatc
gtgccgattggtgccatcggtgcagtgctggcagtgatggtcgccggcatgcccaacgac
gtgtacttcaaggtgggcctgatcaccatcattggtctggcggcgaagaacgcgatcctt
atagtcgagttcgccaaggaactgtgggagaagggctacagcctgcgtgacgccgccatt
gaagccgcacgcctgcgtttccggccgatcgtcatgacctccatggcattcattctcggt
gtggtgccgctggcattggccaccggggcaggggcggcgagtcagcgtgcaatcggtacc
ggtgtgatcggcgggatgctcagcgcgacgttgctgggtgtgctgttcgtgccgatctgt
tttgtctgggtgctttcgcggttgcgcagcaaacccgcgtctgtcgaacgacccgctttg
gttcaggagtga

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