Pseudomonas sp. Stari2: NH234_16005
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Entry
NH234_16005 CDS
T10554
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18296
multidrug efflux pump
Organism
psdt Pseudomonas sp. Stari2
Module
psdt_M00639
Multidrug resistance, efflux pump MexCD-OprJ
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
psdt02000
]
NH234_16005
01504 Antimicrobial resistance genes [BR:
psdt01504
]
NH234_16005
Transporters [BR:
psdt02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
NH234_16005
Antimicrobial resistance genes [BR:
psdt01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexCD-OprJ [MD:
M00639
]
NH234_16005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
XCX97869
LinkDB
All DBs
Position
complement(3569267..3572398)
Genome browser
AA seq
1043 aa
AA seq
DB search
MSKFFIKRPNFAWVVALFISLAGLLVIPMLPVAQYPDVAPPQIKVTATYPGASAKVLVDS
VTSVIEESLNGAKNLLYFESTNNSNGIAEIAVTFQPGTDPQLAQVDVQNRLKKAESRMPQ
AVLTQGLEVEQASAGFLLIYALNYKEGSQHTDTTALGDYAARNINNELRRVPGVGKLQFF
SSEAAMRIWLDPQKLVGYGLSIDDVSTAIRGQNVQVPAGSFGSTPSNSQQELTATLAVKG
TLDNPQEFARIVLRANEDGSTVKLGDVARVEIGQESYNFNSRLNGKPAVAAAIQLSPGAN
AIQTATAVKERLAELSAYFPDDVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLF
LQNIRYTLIPSIVVPVCLLGTLVMMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVER
IMAEEGLSPVDATIKAMGQVSGAIIGITLVLSAVFMPLAFMSGSVGVIYQQFSVSLAVSI
LFSGFLALTFTPALCATLLKPIPQGHHEKRGFFGAFNRGFARLTERYSILNNGLVARAGR
MMLVYVGIIAMLGYFYLRLPESFVPVEDQGYMIVDVQLPPGATRTRTEATGEQLERYLAS
RDAVQSMFLVSGFSFSGMGDNAALAFPVFKDWSLRGEDQSAMVEVMALNEQFAVTNDGAV
MAVPPPPIDGLGNSGGFALRLQDRGGLGREALLAARDQVLGQANGNSKILYAMMEGLAES
PQLRVVIDRDKARTLGVSFESISSALSAAFGSEVINDFTNSGRQQRVVVQAEQGDRMTPE
SVLKLYVHNSAGNLVPLSAFVTTHWEEGPVQLVRYNGYPSIRIVGDAGPGYSTGEAMAEM
ERIAAQLPAGFSYEWTGLSYQEKVSSGQATQLFALAILVVFLLLVALYESWAIPLTVMLI
VPIGAIGAVLAVMVAGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLRDAAI
EAARLRFRPIVMTSMAFILGVVPLALATGAGAASQRAIGTGVIGGMLSATLLGVLFVPIC
FVWVLSRLRSKPASVERPALVQE
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagtttttcatcaaacgcccgaacttcgcctgggtggtggcgttgttcatctca
ctagccggcctgctggtcattccgatgctgccggtggcgcagtatcccgatgttgcgccg
ccgcaaatcaaggtcacggccacttatcccggggcctcggcgaaagtgctggtggactcg
gtcaccagcgtgatcgaagagtcgctcaacggtgccaagaacctgctgtatttcgagtcg
accaacaactccaacggcatcgccgaaattgcggtgacgttccagccgggcactgatccg
cagctcgctcaggtcgacgtgcaaaaccgcctgaaaaaggctgagtcgcgcatgccgcaa
gccgtgctgacccaaggcctggaggtggagcaggccagcgccggtttcctgctgatctat
gcgctcaactataaggaaggctcccagcacaccgacacaaccgcgctgggcgactacgcc
gcgcgcaacatcaacaacgaactgcgccgggtgccgggcgtcggcaagctgcaattcttc
tcatctgaagctgcgatgcgcatctggctcgacccgcagaaactggtgggttacgggctg
tccatcgacgacgtgagcaccgcgattcgcgggcaaaacgtacaggtgccggccggcagc
ttcggcagcacgccgagcaacagccagcaggaactgaccgcgaccctggcggtgaaaggc
acgctggataatccgcaagaatttgcccgcatcgttctgcgtgccaacgaggacggctcg
acggtcaaactaggcgacgtcgcccgcgtggaaatcggccaggaaagctacaacttcaac
tcgcgcctgaacggcaaaccggccgtggccgccgcgatccagttgtcccccggcgccaac
gcgattcagactgcgaccgccgtcaaggaacgcctggccgaactgtcggcgtacttcccg
gacgacgttgaatactccgttccctacgacacttcgcgtttcgtcgacgtcgccatcgag
aaggtgatccacaccctgatcgaggcgatggtgctggtattcctggtgatgttcctgttc
ctgcagaacatccgctacacgctgattccgtcgattgtggtgccggtgtgtctcctcggc
acgttggtgatgatgtacctgctgggcttctcggtgaacatgatgaccatgttcggcatg
gtgctcgccatcggcattctggtggacgacgccatcgtggtggtggagaacgtcgagcgg
attatggcggaggaagggttgtcgccagttgacgccacgatcaaggccatggggcaggta
tccggtgcgatcatcggtatcaccctggtgctgtcggcagtgttcatgccgttggcgttc
atgtccggttcggtgggtgtgatctaccagcagttctccgtgtcgctggcggtgtcgatc
ctgttctcgggcttcctcgcgctgacgttcacgccggctctgtgtgccacgctgctcaag
ccgattccgcaaggacaccatgaaaaacgcggtttcttcggcgccttcaaccgtggtttc
gcgcggctcaccgagcgttactcgatcctcaacaacggcctggtcgctcgtgcggggcga
atgatgctggtgtacgtgggcattatcgcgatgctcggctacttctacctgcgtttgccg
gagtcgtttgtgccggtggaagaccagggctacatgatcgtcgatgtccagttgccaccg
ggcgcgacccgtacccgtaccgaagcgaccggcgaacagcttgagcgctatctcgcctcc
cgtgatgcggtgcagtcgatgttcctggtctcgggtttcagcttctccgggatgggcgat
aacgcggcgctggcattcccggtgttcaaggactggtcgctgcgtggcgaagatcaatcg
gcgatggtcgaggtcatggcgctgaacgaacaatttgccgtgaccaacgacggcgccgtg
atggcggtgccgccgccaccgatcgacggtctgggcaactccggcggtttcgcgctgcgt
ctgcaggatcgcggcggactgggccgcgaagccttgctcgccgcccgtgaccaggtgctc
ggtcaggccaacggcaactcgaaaatcctctacgccatgatggaaggcttggccgaatcg
ccgcaattgcgcgtggtgatcgaccgtgacaaggcccgtaccttgggcgtgagtttcgag
tcgatcagcagtgcgttgtccgccgcgttcggttccgaagtgatcaacgacttcaccaac
tctggccgtcagcaacgtgtggtggtgcaggccgagcagggcgaccggatgaccccggaa
agcgtgctcaaactgtacgtgcacaacagcgccggcaatctggtgccgctgagcgccttc
gtcaccacccactgggaagaaggcccggtgcaactggtgcgctacaacggatatccgtcg
atccgcatcgtcggtgacgccgggccgggctacagcaccggtgaagccatggcggaaatg
gaacgaatcgccgcgcaattgccggcaggtttcagctacgagtggacggggctgtcgtat
caggaaaaggtctccagcggtcaggcgacgcaattgttcgcgctggcgattctggtggtg
ttcctgttgctggtggcgctctacgagagttgggcgattccgttgacggtgatgctgatc
gtgccgattggtgccatcggtgcagtgctggcagtgatggtcgccggcatgcccaacgac
gtgtacttcaaggtgggcctgatcaccatcattggtctggcggcgaagaacgcgatcctt
atagtcgagttcgccaaggaactgtgggagaagggctacagcctgcgtgacgccgccatt
gaagccgcacgcctgcgtttccggccgatcgtcatgacctccatggcattcattctcggt
gtggtgccgctggcattggccaccggggcaggggcggcgagtcagcgtgcaatcggtacc
ggtgtgatcggcgggatgctcagcgcgacgttgctgggtgtgctgttcgtgccgatctgt
tttgtctgggtgctttcgcggttgcgcagcaaacccgcgtctgtcgaacgacccgctttg
gttcaggagtga
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