Pseudomonas sp. Stari2: NH234_18180
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Entry
NH234_18180 CDS
T10554
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
psdt Pseudomonas sp. Stari2
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psdt01002
]
NH234_18180
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psdt01011
]
NH234_18180
Peptidases and inhibitors [BR:
psdt01002
]
Cysteine peptidases
Family C82
NH234_18180
Peptidoglycan biosynthesis and degradation proteins [BR:
psdt01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
NH234_18180
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
XCX98275
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All DBs
Position
complement(4007885..4009489)
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AA seq
534 aa
AA seq
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MFKKYACYLSICLLAAPFVVCAEEPLPALPTLAAEVPVEPQSPLQAVLIGLPQACPAIAA
RLSGPALEQLQAFYRQQDWMPVWAAAGQLPALHAQLQLLADDGLNPKRYPVADTAPQDGE
LCADIDISRNYLQALQDLHYGRLLQSHFEPLWHSDDTPRDRQAELLAIAVPGMHDVAAAF
DLARPRLAQYQNLRHLYAAQRLQALPHWQSVGNGPLLRPDMEDKRVPELARRLYSEGYLS
SVVGTPDNAYHGVLVEAVKSFQANHSLQADGVVGPGTIAEMNISPLTRREQLRVNLERFR
WLAQDMEPDGLLVNVAAAELTLYQGGQPVWQTRTQVGRAERQTPLLKSRVTRLTLNPTWT
VPPTIWKEDKLPEIRKDQTFLSRQNLQVLDANGQPLAAADIDWDNPGNILLRQDAGPRNP
LGQMVIRFPNPFSVYLHDTPSKALFDKGPRAFSSGCVRVEHPMKLRDFLLSPAEIARTDT
LLATGTTHEFRLSNPVPILMTYWTAQVDGQGRVLYAPDIYSRDSALLAGLDRAH
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaaaaagtacgcatgctacttgagcatttgtctgctcgctgcgccgtttgtcgtt
tgtgccgaagagccgttgccggcgctcccgacactggcggcggaggtgcccgtggagccg
caaagtccgttgcaggccgtgcttatcggtctaccgcaggcttgcccggcgattgccgcc
cgtctcagtggcccggccctggaacagttgcaggcgttctaccggcagcaggactggatg
ccggtgtgggcagcggcggggcaattgccggctttgcacgcgcaattgcagctgctggcc
gacgatggcctcaatccgaaacgctatccggtcgccgacacggccccgcaggatggcgaa
ctgtgcgccgacatcgacatcagtcgcaattacctgcaagccttgcaagatctgcattac
ggtcgtctgctgcagtcgcatttcgaaccgttgtggcattccgacgatacgccccgcgat
cgtcaggcggagctgctcgccatcgccgtgccgggcatgcatgacgttgctgccgccttc
gatctggcgcgcccgcgcctggcgcaataccagaacctgcgtcatctctatgccgcacaa
cgtctgcaggccttgccgcactggcaatcggtgggcaacgggccgttgctgcgcccggac
atggaagacaaacgcgtgccggagctggcgcggcggctgtacagcgaaggttatctgagc
agtgtggtcggcacgccggacaacgcttatcacggtgttttggtcgaagccgtgaaaagc
ttccaggccaaccattcgttgcaggccgacggtgtggtcgggccggggacgatcgccgag
atgaacatcagcccgctgacccgtcgcgagcaactgcgggtcaaccttgagcgtttccgc
tggctggcccaggacatggagcccgatggtttgctggtcaacgttgccgccgccgagctg
accctgtaccagggcggtcagccggtgtggcagacccgtactcaggtcggtcgcgccgag
cgccagacgccgctgctcaaatcccgggtcacgcgcctgaccctgaacccgacctggacc
gtgccaccgaccatctggaaagaagacaagctgccggaaatccgcaaggaccagaccttc
ctcagccgtcagaacctgcaagtactcgacgccaacggccagccactggccgccgccgac
atcgactgggacaaccccggcaacatccttctgcgtcaggatgccgggccgcgcaatccg
ctggggcaaatggtcatccgcttcccgaacccgttctcggtgtacctgcacgacacgccg
agtaaggcgctgttcgacaaggggccgcgggcgttcagttccggttgtgtgcgggtcgag
cacccgatgaagctgcgcgacttcctgctcagtccggcggaaatagcccgcaccgacacc
ttgctcgccaccggcaccacccatgagtttcgcctgagcaacccggtgccgatcctcatg
acttactggacggcacaagtcgacgggcagggccgcgtactttatgcgccggacatctac
agccgtgacagcgcgttgctcgcgggccttgaccgggcgcattga
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