Pseudomonas sp. Stari2: NH234_18350
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Entry
NH234_18350 CDS
T10554
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NH234_18350 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psdt02044
]
NH234_18350 (tssC)
Secretion system [BR:
psdt02044
]
Type VI secretion system
Imp/Vas secretion system core components
NH234_18350 (tssC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
TssC
Motif
Other DBs
NCBI-ProteinID:
XCX98307
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Position
4046201..4047685
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AA seq
494 aa
AA seq
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MPAAAQNQASENAAAETLSLLDRIIAEGRMAHDDSQQDYARDMLAEFATQVLDEGMAIDK
DTVAMINDRISKIDELISAQLNEVLHHPDLQKLEASWRGLHMLVQNTETSTRLKLRLLNV
TQKELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLVGDYTFGRHPQDIGLLEKLS
NVAAAAHAPFIAAASPRLFDMNSFTELAVPRDLSKVFESQELIKWRSFRESEDSRYVSLV
LPHFLLRLPYGPDTSPVEGINYVEDTNGTDHSKYLWGNAAWALSQRITEAFAKYGWCAAI
RGAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFIALCHKKNSDIAV
FFGGQTTNKSKVYNTNEANANARISAMLPYVLAASRFAHYLKVIMRDKVGSFMTRDNVQT
YLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVAGKPGAYRATVFLRPHFQLEELTA
SIRLVATLPPPVAA
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgccgcccagaatcaagccagcgaaaatgctgccgccgaaactttatccctg
cttgaccggatcattgccgagggccgcatggcccatgacgacagccagcaggactatgcc
cgcgacatgctcgcggagttcgccacccaggtactcgacgaaggcatggccatcgacaag
gacaccgtggcgatgatcaacgaccgcatcagcaagatcgatgagctgatcagcgcccag
ctcaatgaagtgctgcaccacccggacctgcaaaaactcgaagcgtcctggcgcggcctg
cacatgctggtgcagaacaccgaaaccagcacccggttgaagctgcgcctgctcaacgtg
acccagaaagagctgcagaacgacctggaaaaagccgtggaattcgaccagagcgcgctg
ttcaaaaagatctacgaagaggaatacggcaccttcggtggccacccgttcagccttttg
gtcggtgactacaccttcggccgtcacccacaggacatcggcctgctggaaaaactctcg
aacgtcgccgccgctgcgcacgcgccattcattgccgccgccagcccgcgactgttcgac
atgaacagcttcactgaactggccgtgccccgtgacctgtcgaaagtgttcgagagccag
gaactgatcaagtggcgctcgttccgtgaaagcgaagactcgcgctacgtctcgctggtg
ctgccacacttcctgctgcgcctgccttacggcccggacacttcgcctgtggaaggcatc
aactacgtcgaagacaccaacggcaccgaccacagcaaatacctgtggggcaacgccgca
tgggcgctgtcgcaacgcatcaccgaagcctttgccaagtacggctggtgcgcggcgatc
cgtggcgctgaaggtggcggcgcagtcgaaggcctgccggcgcacaccttccgtaccagc
tccggcgacctgtcgctcaaatgcccgaccgaagtggcgatcaccgaccgccgggaaaaa
gagctcaacgacctcggcttcatcgccctgtgccacaagaagaacagcgacatcgcggtg
ttcttcggcggccagaccaccaacaagtccaaggtctacaacaccaacgaggccaacgcc
aacgcacggatctcggcgatgttgccgtacgtgctcgcggcctcgcgtttcgctcattac
ctgaaggtgatcatgcgcgacaaggtcggcagtttcatgacccgcgacaacgtgcagacc
tacctcaacaactggatcgccgactacgtgctgatcaacgacaacgcgccgcaggaaatc
aaggcgcaatacccgctgcgtgaagcgcgggtggacgtcaccgaagtcgccggcaagccc
ggtgcctaccgcgcgaccgtgttcctgcggccgcacttccagctcgaagaactgacggca
tcgatccgactggtcgcgaccctgccgcctccggtggcagcctga
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