Pseudomonas sp. Stari2: NH234_19285
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Entry
NH234_19285 CDS
T10554
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
psdt Pseudomonas sp. Stari2
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psdt03000
]
NH234_19285
Transcription factors [BR:
psdt03000
]
Prokaryotic type
Helix-turn-helix
Other families
NH234_19285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
HTH_30
AAA_5
nSTAND6
AAA_2
HTH_7
HTH_23
AAA_3
AAA
HTH_10
AAA_7
Mg_chelatase
HTH_22
AAA_16
HTH_Tnp_1
HTH_20
HTH_28
nSTAND3
HTH_11
MCM
DUF815
HTH_psq
HTH_AsnC-type
AAA_14
HTH_17
Motif
Other DBs
NCBI-ProteinID:
XCX98489
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Position
4230040..4231887
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AA seq
615 aa
AA seq
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MAAPVPPLSHEAIVQDSWSRCRAFGLKHQSAPAFDQLPASGIAQLLDSHHSLVQTTHQEV
LPYYENILSNSNCLIMLADNQGQVLTSWGTQRFIEPNLARGFQAGASWMEHASGTNAIGT
ALACEQAVHIEHDEHFLKANRFMTGSAAPIFNAERKVIAVLDVSSDSYLPPSHTLGMVKM
MSQTVENRLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDESGQVLSANRRADNLLGVR
LSRVSVESLFKVSLLELLNQPDGLPFSLLTSGRNRFQCLLKRPKQAPIQARVFAETKAPE
PQVTAPTPISLNTLHFGDSRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHKASS
RSKQAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMP
LPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFREDLYYRIGGLT
LELPPLRERSDKQALFKRLWEQHREPTQWAGLSREVLELFDRHPWPGNLRQVSSVMQVAL
AMAEEQPVRPEHLPDDFFVDLEMEPLETPEPLGIDLNDSEALNRELQAAGGNISHLARRL
GVSRNTLYKRLRQAE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacctgtcccgccactttctcacgaggccatcgttcaggactcctggtcccgt
tgccgcgccttcggcctcaagcatcaaagtgccccggcgttcgaccagttgcctgcctcc
ggcattgcgcagttgctcgacagtcaccattcactggtgcagaccacccatcaggaagtg
ttgccgtactacgagaacatcctgagcaattccaactgcctgatcatgctggccgacaat
cagggccaggtccttacgtcctggggcacccaacgctttatcgagccgaatctggcgcgg
gggtttcaggccggggcgagctggatggaacacgccagcggcaccaatgccatcggcacg
gcgctggcctgcgagcaggcggtgcacatcgagcacgacgaacatttcctcaaggccaac
cgtttcatgaccggctccgccgcaccgattttcaacgccgagcgcaaggtcatcgccgtg
ctcgatgtgtccagcgacagctatctgccgccttcgcacactctcggcatggtcaagatg
atgagccagaccgtggaaaaccggctgatcctcaacctgtttcacggccagcactttcaa
ctgaccttcaacaccgggttgaacaacctcgacagccagtgggcagggttgctgatattc
gatgagagcggtcaggtgctgtcggccaaccgccgggccgacaatctattgggcgtgcgg
ctgtcgcgggtgagtgtcgaaagtctgttcaaggtgtcgttgctggaattgctcaatcag
ccggatggtttgccgttttccttgctgacgtctgggcgcaaccgtttccagtgcctgttg
aaacgacccaagcaggccccgattcaggcgcgggtgttcgctgaaaccaaagcccctgag
ccgcaagtcaccgcacccacacccatcagcctgaacaccctgcacttcggcgacagccga
gtggaaaaggccgtgcgtcaggccgagcggctgctggaaaaagacattccgctgttgatt
cacggtgaaaccggggtcggcaaggaagtgttcgtcaaagccctgcacaaggccagttct
cgcagcaaacaggcgttcatcgctgtgaactgcgcagcgatccccgccgaactggtggag
tccgagctgttcggctacgagaaaggcgccttcaccggcgccaaccagaaaggcagcatc
ggcctgatccgcaaggccgataaaggcacgctgttcctcgacgaaatcggcgacatgccg
ctgccgacccaggcccgcctgctgcgggtgttgcaggagcgttgcgtgcaaccggtgggc
agcagcgaattgttcccggtggatttgcggatcatttccgccaccaaccgctcattgcgc
gagcaggtgcaactggggcgctttcgcgaggatttgtactatcgcatcggcggcctgacc
ctggaattgccgccgctgcgcgagcgcagtgacaagcaggcgctgttcaagcggctctgg
gagcaacatcgagaaccgacgcagtgggcaggtttgagtcgcgaggtactggagctgttt
gatcgtcacccgtggccggggaatttgcgtcaggtcagcagcgtgatgcaggtcgcactg
gccatggctgaagagcaaccggtgaggcccgagcatttgccggatgatttctttgtcgat
ctggagatggaaccactggaaacgccagagcccttggggatcgatctgaatgacagcgag
gcgttgaatcgggagttgcaggcggccggcggcaatatttctcatctggcgcggcggttg
ggtgtcagtcgcaatacgctctacaagcgcttgcgccaggctgagtga
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