Pseudomonas sp. Stari2: NH234_20450
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Entry
NH234_20450 CDS
T10554
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NH234_20450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psdt03400
]
NH234_20450 (mfd)
Enzymes [BR:
psdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NH234_20450 (mfd)
DNA repair and recombination proteins [BR:
psdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NH234_20450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XCX98711
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All DBs
Position
4491449..4494898
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AA seq
1149 aa
AA seq
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MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGAGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLMLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAELAEGNIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLLPKTV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaat
ctccccggtgccgccctgagcctggcgattgccgaggctgccagcgctgccaagcgcttc
acgttactgctgaccgccgacagccagagtgccgaacggctggagcaggagctgagtttc
ttcgccccggatttgccggtgttgcatttccccgactgggaaaccctgccctacgacctg
ttctcaccgcaccaggacatcatctcccagcgcatcgccagcctttatagactgccggag
ctggagcatggcgtgctggtggtgccgatcactaccgccctgcatcgcctggcgccgacc
aagttcctgctcggcagcagcctggtgctggatgtcggtcagaagctcgacgtcgagcaa
atgcgctcgcggctcgaagccagcggctatcgctacgtcgacacggtttatgaacacggc
gagttcacggtgcgtggcgcgttgatcgacctgttcccgatgggcagcaaacttccctat
cgcatcgatctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgttccatcgacaaggtcgattcggtcaagctgctgccggccaaggagttcccgctacaa
aaggatgcggtgacccgcttcaaggcgcgctttcgcgagcgcttcgacgtcgatttccgc
cgctgcccgatcttccaggacctgagcagcggcatcacgccggccggcattgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgattacctgccccaggacacccag
gtgttctcgttgccaggcatcgagcaagcggcggaaaacttctggaacgatgtgcgcaat
cgttatgaagaacgccgcgtcgatccatcgcgtcctttactgccgccggccgaactgttc
ttgccggtggaggactgtttcgcccgcctgaagaactggccccgagtggtcgccagtcaa
caggacgtggaaaccggtgccggccgcgaacgcttcccggcgcaggcattaccgaatctg
gcaatcgaagccaaggctacgcaaccgctggccgcgctttccgccttcctcgacgaattc
ccggggcgcgtgctgttcaccgccgaatccgccggccgtcgcgaagtgctgctggaattg
ctggaacgcctgaagctgcggccgaaaaccgtcgacagttggcctgacttcgtcgcgagc
aaggatcgcctggcgattaccatcgccccgctcgacgaaggcttgatgctggatgacccg
gcgctggcactggtcgcggaaagtccgctgttcggccaacgggtgatgcagcgtcgccgt
cgcgaaaaacgcgccgatgccaacaacgatgccgtgatcaagaacctcaccgagctgcgc
gaaggcgcgccagtggtgcatattgaccacggcgtcggtcgttatcttggcctgacgatt
ctggaaatcgacaatcaggctgccgaattcctgaccctcgaatacgccgagaacgccaag
ctctacgtgcccgtagccaacctgcacctgatcgcccgttacaccggtagcgacgatgcg
ctggccccactgcaccgcctcggctccgaaacctggcagaaagccaagcgcaaggctgcc
gaacaggtgcgcgacgtggctgccgaactgctcgacatctatgcccgtcgcgccgcccgc
gaaggttatgcgtttgccgatccgaaggccgattacgcaacgttcagcgccggcttcccg
tttgaggaaaccccggatcagcaatccaccatcgaagccgtgcgcgaagacatgctcgcg
ccgaaaccgatggatcgccttgtctgcggcgacgtgggttttggcaagaccgaggtggcc
atgcgtgccgcgttcattgccgtgcacggcggcaagcaagtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgtgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaacgctgcggtggccgaa
ctggccgaaggcaacatcgacatcgtaatcggcacccataaactgctgcaggacgacgtc
aaaatcaaaaacctcgggctggtgatcatcgacgaagagcaccgtttcggtgtccgtcag
aaggagcagctcaaggccctgcgcagcgaagtcgacattcttacgctgactgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgatctgtcgatcatcgccaca
ccgccggcgcgacgcctgtcggtgcgcactttcgtcatggagcagaacaagagcacggtc
aaagaggccttgctgcgtgagctgctgcgcggagggcaggtttactacctgcacaacgat
gtgaagaccatcgagaagtgcgccgccgaactggccgaactggtgccggaagcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgtttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagtttggcctggcgcagttgcaccag
ttgcgcgggcgcgtcggacgtagtcaccaccaggcctacgcctacctgctgactccgcca
cgccagcagattaccggcgatgcggaaaaacgtctggaagcgattgccaatactcaggat
ctgggtgcgggcttcgtgctggccaccaacgacctggaaatccgtggcgccggtgaattg
ctgggcgatggtcagagcggacagatccaggcagtcggcttcacgctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgaacaaccgaacctcgaccagccgctc
ggcggtggcccggaagtcaatctgcgagtgccggcgctgattccggaagattatctgccg
gacgttcacgcacgcctgatcctgtacaagcgcatcgcctcggccaccgacgaggaaggc
ctgaaggatctgcaggtggagatgatcgaccgcttcgggctgctgccggaaccaaccaag
aatctggtgcgcatcactgcgttgaaattgcaggccgaacagctgggtatcaagaaagtc
gatggcggcccgcaaggcggacgcatcgagttcgcggcgcaaacgccggtcgacccgatg
actctgatcaaactgatccagagtcagccaaaacgctacaaattcgaaggcgccacgatg
ttcaagttccaggtgccgatggagcgtccggaagaacgctttaatactgtagaggcgctg
ttcgagcgcctcctcccgaaaactgtttga
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