Pseudomonas sp. Stari2: NH234_20500
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Entry
NH234_20500 CDS
T10554
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psdt Pseudomonas sp. Stari2
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psdt03032
]
NH234_20500 (topA)
03400 DNA repair and recombination proteins [BR:
psdt03400
]
NH234_20500 (topA)
Enzymes [BR:
psdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NH234_20500 (topA)
DNA replication proteins [BR:
psdt03032
]
Prokaryotic type
DNA Topoisomerases
NH234_20500 (topA)
DNA repair and recombination proteins [BR:
psdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NH234_20500 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
XCX98720
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Position
complement(4503284..4505914)
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTTKGST
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEDEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDANTTPSKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVLPQITKPGDDDVLPDMAQGDVMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPEAGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVVEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFFDGGKWTVEDKRPAKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggctgctgcgggcgaa
gcgccagcgctgtcgcctaaagagaaggcgcgcaagcagctggtctcgcgcatgggggtc
gatccggatcatggctggaaagccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagccttctcggag
ccgggcgagctcgatatcgatcgagtgaacgcgcagcaggcccgtcgtttcctcgaccgc
gtcgtgggttacatggtttctccgctgctgtgggcaaagatcgctcgcggtctgtccgcc
ggtcgtgtgcaatcggtagccgtgaagctggtggttgagcgtgagcgtgaaattcgtgcg
ttcatcccggaagagtactgggaagtgcatgccgacctcggcaccaccaagggctcgacc
gttcgtttcgaagtggcccgtgaaaagggtgaagctttcaagccgctcaatgaagcgcag
gccatggcggccctggagaagctgaagtcctccagctacagcatcgtcaagcgtgaagac
aagccgaccagcagcaaaccgtcggcgccgttcatcacctccacgctgcagcaggccgcg
agtaaccgcctgggcttcggcgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacttatatgcgtaccgactcgaccaacctctcggtcgatgccgtggcg
atggcgcgtacttatatcgaagacgagttcggcaagaagtacctgccggaaacgccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccttccgacgcg
aacaccacgccaagcaagctcgctggcatggagcgtgacgctgagcgcctctacgagctc
atctggcgccagtttctggcttgccagatgctgccggcgcaatacttgtcgaccaccgtc
agcgtggccgctggcgacttcgagctgcgcgccaagggccgtattctgaagttcgacggc
tacacccgcgtcctgccgcaaatcaccaagcctggcgatgacgatgtcctgccggacatg
gcgcagggcgacgtgatgaagctgatcaagcttgatccaacccagcatttcaccaagcca
ccggcccgttactcggaagccagcctggtgaaggaaatggaaaagcgcggcattggccgt
ccttcgacctacgcggcgatcatttcgaccattcaggatcgcggttacgtgaccctgcac
aaccgtcgtttctattcggaaaagatgggtgacatcgtcactgaacgtctgtccgagagc
ttctcgaacctcatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgagcgcgactggaagaacgtgctggatgagttctacggtgacttcaaaaag
aaacttgaagtagccgagaatccggaagccggcatgcgtgccaaccagccggtgatgacc
gatattccgtgcaccacttgcggtcgtccgatgcagattcgtactgcttcgaccggcgtc
ttcctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggcgatgaaatcgctgcggacgacgagggtgaatcggaatccctggtgctg
cgcggcaagcatcgctgcccgatctgcagcacggcgatggacgcttacctgctcgacgaa
aagcgcaagctgcatatctgcggtaacaacccggattgcgccggctacgaaatcgaagag
ggcagctaccgcatcaagggttacgaaggtccgagcctggaatgcgacaagtgtggcagc
gagatgcagctcaagaccggtcgtttcggcaagttcttcggttgtaccaatccgacctgc
aagaacacccgcaagctgctgaagagcggtgacgcggcgccgccgaagatggatccggtg
aaaatgcctgagctgaaatgcgaaaaggtcaacgacacctatatcctgcgcgacggtgct
tcaggcctgttcctggcggccagccagttcccgaaaaaccgcgagacccgtgctccgctg
gtggtcgagattctgccgcacaaggacgagatcgatccgaagtaccacttcctgtgcgaa
gcgccgcagaaggatccagatggtctgccggcagtgatccgctacagccgcaagaccaag
gagcaatatgttcagaccgaagtcgacggcaagccaacaggctggaaagcgttcttcgat
ggtggcaagtggacggtcgaagacaagcgtccggcaaaagccaaggcttga
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