Pseudomonas sp. Stari2: NH234_21165
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Entry
NH234_21165 CDS
T10554
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH234_21165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psdt03019
]
NH234_21165
03009 Ribosome biogenesis [BR:
psdt03009
]
NH234_21165
Enzymes [BR:
psdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NH234_21165
Messenger RNA biogenesis [BR:
psdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NH234_21165
Ribosome biogenesis [BR:
psdt03009
]
Prokaryotic type
rRNA helicases
NH234_21165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
XCX98845
LinkDB
All DBs
Position
complement(4656270..4657943)
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AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtgctgcagaccgtgaaccacctggttctcgacgaagcagacgaa
atgctcaagctgggcttcatggacgacctcgaagtcatcttcaaggccatgccggaaacc
cgtcagaccgtattgttctcggcgaccctgccgcaatcgatccgtgccatcgccgagcgt
cacctgcgcgatccaaagcacgtgaagatccagagcaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctctgccgttctcagcttgctg
gaagtggaagatttcgacgctctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagtgctctcgacgccaaaggctacaaagccgcggcgttgaacggtgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgcccgtggtctggacgttccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggtgacgcctcgtgagcgtcgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtacgtctgccggacgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgccgaatcg
actcacggtgatctgctggatcgcctgaccgccgacatcggttgcaccccgcgtgccctg
gctgccgctctgctgcgcaaggccaccaatggtcaggcgctgaacctggcagcgatcgag
aaggaacgtccactggtgccgaacagcgctccacgtggcgaccgtcctgagcgttccggt
gatcgtccggaccgtggtgatcgcgagcgtcgtgctccgatgccgctgggcgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggcgaaaaacctgctgggc
gccatcctcaacgaaggtggtctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggacaagctcctgaccaagctgaag
gacactcgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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