Pseudomonas sp. Stari2: NH234_22050
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Entry
NH234_22050 CDS
T10554
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt03018
RNA degradation
Brite
Enzymes [BR:
psdt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NH234_22050 (rne)
Messenger RNA biogenesis [BR:
psdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NH234_22050 (rne)
Ribosome biogenesis [BR:
psdt03009
]
Prokaryotic type
rRNA processing factors
NH234_22050 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XCX99012
LinkDB
All DBs
Position
4840224..4843433
Genome browser
AA seq
1069 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEDVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPAAERPARNEERRNG
RQQSRNRNGRRDEERKPREERAPREERAPREPREERQPREARELREPRESRDEAPAAREE
RAPRAPREERAPRAPREDRKPRGEREERVRELREPLDAAPAAATAVAATAEERPARQPRE
ERAPRPPREERQPRAEQAAAAVAEEEITTSEEQLPEDGSENAEGDRPRRRSRGQRRRSNR
RERQRDANGNVIEGSEESTENAGAAEPSTADLAAGLAVTAAVASTVISAPAEAQAHEQAE
RATAATLETAPVEAPVVEATTPVEVVAAPEVEVAPVREAQPKVEVAAEPAFVAPEPVAVA
EPVVETVAETVTETVREVREEQTAFNWVAEPAVAETPAPVVEAPVVEEAKAAEPVVVAEP
APAVEAPVVEAPVAAPAPVSALTPSGRAPNDPREVRRRKREEERLQKEAELAAAAAAAPA
VAEVVEAAPAPVAEEAAVEVIAEAPRSVQEAVEHHEQAQEKEHEPKPLV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccagcgcctctacgacctggacatcgaatccggtgcacgcgagcagaaaaaggccaac
atctataaaggccgcatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggtgcagccctgaccaccttcatcagcctg
gccggtcgttacctcgttctgatgccgaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgcgaagcgctgaacggcctggtcgctccagcc
gacatgggtctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactctggaccgctatcaaggaagcctccctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgaaaccgctttccagcgcgtcgtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagcggccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgcccgcgtgcagatcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccttcgctcggcgaaagcagcggcatcgtc
tgcccgcgctgcagcggcaccggcatcatccgtgacgtcgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagttcgcgcacaagtg
ccgatcccggtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgcccgcatcgtcatcctgccgaacgaccacctcgaaaccccgcatttc
gaagttcagcgtctgcgtgacgacagcccggaagccgcgaccaaccagtccagctacgaa
atcgctgccgctgctgccgaagtcgaagacgtccagccagccgccgcgacccgcaccctg
gttcgccaggaagctgcggtcaagaccgctccggcccgcgccaacgctccggttccgacc
gaagttgccgcaccggcgccagcgcctgctccggttgccgcgccagaaccaagcctgttc
aaaggcctggtgaagtcgctggtcagcctgttcgccaccaaagaagagcctgttgctccg
gttgtggttgaaaaacctgccgccgagcgtccggcccgcaacgaagagcgtcgcaacggt
cgtcagcagagccgcaaccgtaacggtcgccgcgatgaagaacgcaagccgcgtgaagag
cgtgctccacgtgaggaacgcgcaccgcgtgagccacgtgaagagcgccagcctcgtgaa
gcccgtgaactgcgcgagccacgcgagtcccgtgacgaagcaccggcagcccgcgaagaa
cgcgcaccacgcgcccctcgtgaagaacgtgctccacgtgctccacgtgaagatcgcaag
ccgcgtggcgagcgtgaagaacgcgtacgcgaactgcgtgaacctctggatgctgcgcca
gccgctgctaccgccgttgccgccaccgctgaagagcgcccagcccgtcagccgcgtgaa
gaacgcgcgccacgcccaccgcgtgaagagcgtcaaccgcgtgccgagcaagccgctgct
gccgtggctgaagaagaaatcaccaccagcgaagagcaactgccggaagacggttcggag
aacgccgagggcgatcgtccacgccgccgctcccgtggtcagcgtcgtcgcagcaaccgt
cgcgagcgtcagcgcgatgccaacggcaacgtgatcgaaggttcggaagagtccaccgag
aacgctggagccgccgagccaagcactgccgatctggctgccggcctggccgttactgcc
gctgttgccagcaccgtgatcagcgctccggccgaagctcaggcccacgagcaagctgaa
cgcgctaccgctgcaacgctggaaaccgctccagttgaagcgccggtggttgaagccacc
actccggtagaagtggtggctgctccggaagtcgaagtggcgccggttcgcgaagctcag
cctaaggttgaagtcgctgccgaacctgctttcgtcgcccccgagcctgttgcagtggca
gagccggttgtcgagaccgtcgctgaaaccgtgaccgaaaccgtgcgtgaagttcgcgaa
gaacagaccgccttcaactgggtcgccgagccggccgtcgctgaaacaccagcgccagtg
gttgaagcgcctgtcgtggaagaagccaaggccgctgaaccagtggttgtcgctgaaccg
gcacctgccgttgaagcgccggtcgtggaagcgccagtcgctgcgcctgctccggtcagc
gccctgacgccaagtggccgcgccccgaacgacccgcgcgaagtgcgtcgtcgcaagcgt
gaagaagagcgtctgcagaaggaagccgaactggctgccgctgccgccgctgctccagcc
gttgccgaagtggtcgaggcagcccctgccccggtcgcggaagaagctgccgtagaagtg
attgccgaagcaccgcgctccgtacaggaagcggtcgagcaccatgaacaggcccaggaa
aaagaacacgaacctaaacctctcgtctga
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