Pseudomonas sp. Stari2: NH234_23000
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Entry
NH234_23000 CDS
T10554
Symbol
fadD2
Name
(GenBank) long-chain-fatty-acid--CoA ligase FadD2
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt00061
Fatty acid biosynthesis
psdt00071
Fatty acid degradation
psdt01100
Metabolic pathways
psdt01212
Fatty acid metabolism
psdt02024
Quorum sensing
psdt04146
Peroxisome
Module
psdt_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
NH234_23000 (fadD2)
00071 Fatty acid degradation
NH234_23000 (fadD2)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
NH234_23000 (fadD2)
09145 Cellular community - prokaryotes
02024 Quorum sensing
NH234_23000 (fadD2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
psdt01004
]
NH234_23000 (fadD2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psdt04147
]
NH234_23000 (fadD2)
Enzymes [BR:
psdt01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
NH234_23000 (fadD2)
Lipid biosynthesis proteins [BR:
psdt01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
NH234_23000 (fadD2)
Exosome [BR:
psdt04147
]
Exosomal proteins
Exosomal proteins of breast milk
NH234_23000 (fadD2)
Exosomal proteins of breast cancer cells
NH234_23000 (fadD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
XCX99184
LinkDB
All DBs
Position
complement(5027731..5029419)
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AA seq
562 aa
AA seq
DB search
MQPDFWNDKRPAGVPLDIDANEFKSVIEVFERSCKKFADRPAFSNMGVTLTYAELERQSA
AFAGYLQTHTDLVPGDRIAVQMPNVLHYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKD
SGARALVYLNMFGQKVQEVLPDTDIQYLIEAKMGDLMPTAKGWLVNTVVSKVKKMVPAYS
LPQAISFKSALRMGRGLGIKPLKVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMQQVR
ACLAQFGSDGQPLLREGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIGGFI
KELKNWKFSALLGLNTLFVALMDHPDFKTLDFSTLKLTNSGGTALVKATAERWEQLTGCR
ITEGYGLTETSPVACTNPYGELSRIGTVGLPVPGTRLKVINDDGVEQPLGERGELCIKGP
QIMKGYWQKPEATAEVLDAEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYPNEIE
DVVMAHPKVANCAVIGVPDERSGEAVKLFVVARETGVSLEELKAYCKENFTAYKVPKHIV
LRESLPMTPVGKILRRELRDIA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctgatttctggaatgacaaacgcccggcgggcgtgcccctggacatcgatgcg
aatgaattcaagtcggtgatcgaggtgttcgagcgttcctgcaagaaattcgctgatcgc
ccggcgttcagcaatatgggcgtgaccctgacctacgccgagctcgagcgccagagcgcc
gcgttcgccggttatctgcaaacccacaccgatctggtgccgggggatcgcatcgcggtg
cagatgcccaacgtcctgcattatccgattgccgtgttcggcgcgttgcgcgccgggctg
atcgtggtcaacaccaacccgctgtacaccgcgcgcgagatgcgtcatcagttcaaggac
tccggcgcccgggcgctggtgtacctgaacatgttcggccagaaagtccaggaagtgctg
ccggacaccgacattcaatatctgatcgaagcgaagatgggcgacctgatgcccaccgcc
aagggctggctggtcaacaccgtggtcagcaaagtgaagaaaatggtcccggcgtattcg
ctgccccaagcgatttccttcaagagcgccttgcgcatgggccggggcctgggcatcaag
ccgctgaaggtcggcctggacgacatcgccgtgctgcaatacaccggcggcaccaccggt
ctggccaagggcgcgatgctgacccacggcaatctggtggcgaacatgcagcaggttcgc
gcctgtctcgcccagtttggcagcgacggtcagccgttgttgcgcgaaggtcaggaagtg
atgatcgcgccgttgccgctgtaccacatctatgccttcaccgcgaattgcatgtgcatg
atggtgtcgggcaatcacaacgtattgatcaccaatccacgggacatcggcggctttatc
aaggagctgaagaactggaagttctcggcactgctggggctcaacaccctgttcgtcgcg
ctgatggatcatccggacttcaagaccctggatttctccacgctcaaactcaccaactcc
ggcggcaccgcgctggtcaaggctaccgccgagcgctgggagcagctcaccggttgccgc
atcaccgaaggctacggcctgaccgaaacctcgccggtggcctgcaccaacccgtacggt
gagctgtcgcggatcggtacggtcggcctgccggtgccgggcacccggttgaaagtcatc
aatgacgacggcgtcgagcagcctttgggagagcgcggcgaactgtgcatcaagggcccg
caaatcatgaagggctactggcagaaacccgaggccaccgccgaggtgctggacgcggag
ggctggttcaagtccggcgacatcgcggtgatcgacccggacgggttcgtgcgcatcgtc
gaccgcaagaaagacatgatcatcgtctccggtttcaacgtgtacccgaacgagatcgaa
gacgtggtgatggctcacccgaaagtcgccaactgcgcagtgatcggcgtaccggacgaa
cgctccggggaagcggtgaagctgttcgtggtggcgcgggaaaccggggtcagcctggaa
gagctgaaggcctattgcaaagagaatttcaccgcgtacaaggtgccgaaacacatcgtg
ctgcgtgagtcgttgccgatgacgcctgtcgggaaaattctgcggcgtgagttgcgcgat
atcgcctga
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