Pseudomonas sp. Stari2: NH234_25980
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Entry
NH234_25980 CDS
T10554
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt03030
DNA replication
psdt03430
Mismatch repair
psdt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NH234_25980
03430 Mismatch repair
NH234_25980
03440 Homologous recombination
NH234_25980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psdt03032
]
NH234_25980
03400 DNA repair and recombination proteins [BR:
psdt03400
]
NH234_25980
Enzymes [BR:
psdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NH234_25980
DNA replication proteins [BR:
psdt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NH234_25980
DNA repair and recombination proteins [BR:
psdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NH234_25980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Ribosomal_L26
RNase_H_2
DUF1059
Motif
Other DBs
NCBI-ProteinID:
XCX99736
LinkDB
All DBs
Position
complement(5670913..5671518)
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AA seq
201 aa
AA seq
DB search
MERIAVIDFETTGISPSSSCRATEIAVVMLENGRIVERYQSLMNAGVRVPAFIEQLTGIS
NAMLRTAPSAEQVMNEVNEFVGCTPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLLLA
RRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMADAEMAANLLAHLTDELRHKHGVRELSHD
LLCKLQKVPAAKVGEHLQRYR
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgcattgcagtcatcgactttgaaaccaccggcatttcgccgagcagcagttgc
cgggccacggaaattgccgtggtcatgctggaaaacggccgtatcgtcgagcgttaccag
agcctgatgaacgccggcgtgcgcgtcccggccttcatcgaacaactcaccggcatcagc
aacgccatgctgcgcaccgctccgtcggccgaacaggtgatgaacgaagtcaacgaattc
gtcggctgcacgcccctgctggcgcacaacgccgcgttcgaccagaagttctgggacttc
gaactgggccggatcaaacgtacccgcctgcagaactttgcttgttcgctgttgttggcc
cggcgtttgatgccagcggcgccgaaccacaagctcggcacgctcaccacctttgcccaa
ttgccgcataccggccaggcgcacagggcgatggcggatgcggagatggcggcgaatttg
ctggcgcatctgacagatgagttgcggcacaagcatggcgtgagggagctatcgcacgac
ctgctgtgcaaattgcagaaagtaccggccgccaaggtcggcgagcacttgcagcgctat
cgctga
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