Pseudomonas sp. Stari2: NH234_26035
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Entry
NH234_26035 CDS
T10554
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psdt Pseudomonas sp. Stari2
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psdt03019
]
NH234_26035 (hrpB)
Enzymes [BR:
psdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NH234_26035 (hrpB)
Messenger RNA biogenesis [BR:
psdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NH234_26035 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
Flavi_DEAD
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
XCX99747
LinkDB
All DBs
Position
complement(5681918..5684437)
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AA seq
839 aa
AA seq
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MNFLPIDDVLPALREALATRHEAVLEAPPGAGKTTRVPLALLNEAWLNGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPATRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFRAEQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVTMRWGRPFQPGEYIDQRVTQTVLEALHDETGSLLVFLPGQAEIRRVHQQLSDAI
GEGSDILLCPLHGELDLNAQRAAIDPAPAGQRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISKASATQRAGRAGRLEPGVCYRLWSQDQHEQLAAYGSAEILS
ADLAGLALQLGRWGVAPSDLIWLDVPPTAAYAQAQDLLLRLGALDGESLNRHGQAMAELP
AHPRIAHLLLRGQALGLADMACDVAALLGERDILRGAGADLHSRLVLLSGEERAARSAQG
GVQRARQLARQYHGYLRGQPSEPVADPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLAN
GRAALFAEADSLMKEPWIVIADLGSRQGQREERIYLAADFDPALFDSVLAEQVHTVDQLD
WDEREGVLRAERQRKVGELILSREPLTGLDENARSQALVNLVRRKGLELLPWTPELRQWQ
ARVALLRQLDLDAKGDSQWPDVSDATLLKTLEDWLMPYLGKVSRLSHFANLDLSSIVRNL
LPWPLPQQLDEQAPHHLSVPSGSSIRLDYSEQPPILAVRLQELFGLADTPRIAGGRQVVK
LHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPRGT
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgaattttttgccaatcgacgatgttttacccgccctgcgtgaagccctcgcgacacgc
catgaagccgtgctcgaagcaccgcccggcgccggtaaaaccacccgcgtgcctttggcc
ctgctcaatgaagcgtggctgaacgggcagaccattctgatgctcgaaccgcgtcggctg
gccgcccgcgcagcggcggaacggctggccagcgagctgggcgagaaggtcggtgaaacc
gtcggttatcgcatccgcctcgacagcaaggtcggtcccgccacgcgcatcgaagtggtc
accgaaggtatcctcacccggcgcttgcaggacgacccggcgctggaaggcgtgggtctg
ctgatcttcgacgaattccacgagcgcagcctcgacgccgatctggcgttggccctcagt
ctgaacggtcgcgagctgtttcgagctgaacagccgctgaagattttgctgatgtccgcc
accctcgagggcgaacgtctggccggcctgctcgacgacgcgccgatcctgcgcagcgaa
ggccggatgttcccggtgacgatgcgctggggccggccgttccagcccggcgaatacatc
gatcaacgcgtcacgcaaacggtactcgaagccctgcacgatgaaaccggcagcctgttg
gtgttcctgccggggcaggcggaaatccggcgtgttcatcagcaactgtcggacgccatc
ggtgaaggcagcgacatcctgctctgtccgttgcacggcgaactcgacctgaatgcgcaa
cgcgctgccatcgacccggcgcccgcaggccagcgcaaagtggtgctggccaccaacatc
gccgagaccagcctgaccatcaacggcgtgcgcgtggtgatcgacgccgggctggcgcgg
gtgccgcgtttcgacccgggcagcggcatgacccgtctcgatactcaacgtatctccaaa
gccagtgccacccagcgagcgggccgggccgggcgtctggagccgggcgtgtgttatcgc
ctgtggtcgcaggatcagcacgaacaactggcggcttatggcagtgcggaaattctttcg
gcggatctggccgggctggccttgcaactcggacgctggggcgtggcgccgagtgatttg
atctggctcgacgtaccgccaaccgccgcgtatgcacaggctcaggatttgttgctgcgc
ctcggtgcgctggacggtgaaagtctcaaccgtcatggtcaggccatggctgaattgccg
gcccatccgcgcatcgcccatttgctattgcgcggtcaggcgctggggctggcggacatg
gcgtgcgacgttgccgcgttgctcggtgaacgcgacattttgcgcggtgccggagcggat
ctgcacagtcgtctggtgctgctgtccggcgaagagcgcgcggcgcgcagcgcccagggt
ggggtgcagcgcgcccggcaactggcgcggcaatatcacggctacctgcgcgggcagccg
agcgaaccggtggccgacccggatcacccgcgctggcttggcgccttgctggcgctggcc
tatccggatcgcgtcgctcaacagcggcgtgccggtggtgccgaatatcgactggccaac
ggccgtgcggcgctgttcgccgaagccgacagcctgatgaaggagccgtggatcgtcatc
gccgaccttggcagccgtcagggccagcgtgaggaacggatttatctggcggcggatttc
gatccggcgctgttcgattcggtgctggccgaacaggtgcacaccgtcgatcaactggac
tgggacgaacgcgaaggcgtgctgcgggccgagcgtcagcgcaaggttggcgaactgatc
ctcagccgcgagccgctgaccggtctcgacgaaaatgctcgcagccaggcattggtcaat
ctggtgcggcgcaaaggtctggaactgctgccgtggacacccgaactgcgccaatggcag
gcgcgagtcgcgttgctgcgccagctcgacctggacgccaagggcgacagccaatggccg
gatgtcagcgacgccacattgctgaaaaccctcgaagactggctgatgccttatctgggc
aaggtctcgcggctcagccatttcgccaacctcgacctgtcgagcatcgtgcgtaatctg
ctgccgtggccgcttccacagcaactcgacgaacaggcgccgcaccacctgagcgtgccg
tcgggctcatcgattcgcctcgactacagcgagcagccgccgattctcgccgtgcgcttg
caggagttgttcggcctcgccgacacaccgcgcattgccggcggccggcaagtggtcaag
ctgcacctgctatccccggctcggcgcccagtgcaggtgacgcaggatctggccaacttc
tggcgcagcacctatgccgaggtgaagaaagatctgaaggggcggtatccgaagcattac
tggccggacgacccactggtggccgaggccactgctcgggccaaaccgcgcggtacgtga
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