Pseudomonas sp. Stari2: NH234_26305
Help
Entry
NH234_26305 CDS
T10554
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
psdt Pseudomonas sp. Stari2
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psdt03000
]
NH234_26305
Transcription factors [BR:
psdt03000
]
Prokaryotic type
Helix-turn-helix
Other families
NH234_26305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
HTH_8
Sigma54_activ_2
AAA_lid_14
GAF
AAA_5
PAS_4
AAA_2
HTH_7
HTH_23
HTH_30
PAS_8
AAA
HTH_50
HVO_A0261_N
HTH_17
PAS_9
PAS
HTH_22
RWP-RK
HTH_AraC
Mg_chelatase
HTH_28
HTH_20
Diguanyl_cycl_sensor
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
XCX99798
LinkDB
All DBs
Position
complement(5741992..5743908)
Genome browser
AA seq
638 aa
AA seq
DB search
MHDNHLSRHAQQVLTVTQGKPHLHGPGADPSIARSWLRCLEDYHLDPALTMAPTVLEHGR
VLESRERLQQVLQIAGNEMTSLHQQLSGAGHAVLLTDARGVILNCVTAPSERRIFERAGL
WLGSDWSEACEGTNGIGTCLVERQALTIHQDEHFRGRHTGLTCSASPVFDPHGELLAVLD
VSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRCFDNQWLLRFHLQAESVGLFSEGLLA
FDGEGRISAVNQSALNLLGHIRGGLLGKPVEVFFDCSLDELLGRASAHASASWPLRTRDG
RHLFAVLRGEARKPSPVLPKPAAPEAPRLAGICLGDAGLQTDFRKALRVFERDVPLLVNG
ETGSGKEAFAKAVHNASQRAGKAFVALNCAAIPESLIESELFGYRGGSFTGARKDGMRGK
LQQADGGTLFLDEIGDMPLTLQTRLLRVLEDRQVVPIGGEPEAVNVRIISATHRNLLERV
GDGSFREDLYYRLNGLEVALPPLRERSDKSELLDFLLAEEAGGETILIEEPARRALLGFN
WPGNVRQMRNVLRTLAALCDEGRIGLDDLPAMFRQIQPLLVKVDEASPGQPLEDAERLAL
LNALEHTRWHMTHTAEQLGVSRNTLYRKLRKHGIARSA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaaccatttgagtcgccatgcccaacaggttctcaccgtcacccagggcaag
ccgcacctgcatggccccggtgccgacccgtcgatcgcccgctcgtggctgcgttgtctt
gaggactatcacctcgacccggccctgaccatggcgccgaccgtgctcgaacacggtcgt
gtcctcgaaagccgcgaacggctgcaacaagtgttgcagatcgccggcaatgaaatgacc
agcctgcatcaacaactctccggcgccggccacgcggtgctgctgaccgacgcgcgcggg
gtgatcctcaactgtgtcactgccccttccgagcgcaggatcttcgaacgggccggcctg
tggctgggctccgactggagcgaagcctgcgaaggcaccaacggcatcggcacctgcctg
gtggagcgccaggccctgaccattcatcaggacgagcatttccgtggtcgccacactggg
ctgacctgctcggcgagcccggtgttcgacccccacggcgagttgctggcggtgctcgac
gtgtcctcggcgcggccggacgtttcacggcagagccagttccacaccatggcgctggtc
aatctgtcggcgaagatgatcgagagctgttacttcctgcgctgtttcgataatcaatgg
ttgctgcgtttccatctccaggccgaatccgtcgggcttttcagtgaagggctgctcgcg
ttcgacggggaagggcggatcagtgcggtcaaccagagcgcattgaacctgctcggccat
attcgtggtggtttgcttggcaaaccggtagaggtgtttttcgattgttcgctggatgaa
ttgctcgggcgcgccagtgctcatgccagcgcaagctggccgctgcgtacccgcgatggt
cggcatctgtttgcggtgttgcgcggagaagcgcgcaagccgtctcccgtcctgccgaaa
ccggcagctcccgaggcgccgcgccttgccggcatttgcctgggcgatgcagggctgcag
acggattttcgcaaggccctgcgggtgttcgagcgcgacgttccgctgctggtcaacggc
gaaaccggctccggcaaggaagcattcgccaaggctgtgcacaacgccagtcagcgcgcc
ggcaaagccttcgtcgcgctcaactgcgcggcgattcccgaaagcctgatcgagagcgaa
ctgttcggctatcgcggcggcagctttaccggcgcgcgcaaggacggcatgcgtggcaag
ttgcagcaggccgacggtggcacgctgtttctcgacgaaatcggcgatatgccgctgacc
ttgcagacccgtctgctgcgagtgctggaagaccggcaagtggtaccgatcggtggcgag
ccggaagcggtcaacgtgcggatcatcagcgccacgcaccgcaatctgctggagcgggtt
ggcgacggcagtttccgtgaagacctctactatcggctcaacgggctggaagtggcgctg
ccgccattgcgcgagcgcagtgacaaatccgaattgctggattttttgctggccgaagag
gcgggtggagaaacgatcctgatcgaagagccggcgcgccgggcgttgctcgggttcaac
tggccaggcaatgtgcggcagatgcgcaacgtgctgcgcacgctggcggcgttgtgcgat
gaggggcggatcgggctggatgatctacctgcgatgttccggcagatacaaccgctgttg
gtcaaagtcgatgaggcatcgcccggacagccgctggaggatgccgagcggctggcgttg
ctcaatgcgctggagcacacgcgctggcacatgacccatacggccgagcagcttggtgtc
agtcgcaacaccctttatagaaagctgcgcaaacacgggatcgcccgcagcgcctga
DBGET
integrated database retrieval system
