Pseudomonas sp. Stari2: NH234_27360
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Entry
NH234_27360 CDS
T10554
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psdt Pseudomonas sp. Stari2
Pathway
psdt02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psdt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NH234_27360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdt03021
]
NH234_27360
Transcription machinery [BR:
psdt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NH234_27360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_24
Rv2175c_wHTH
Sigma70_ECF
HTH_17
HTH_3
PhyR_sigma-like
FaeA
HTH_31
Sigma70_r3
HTH_11
PCI
HTH_5
Motif
Other DBs
NCBI-ProteinID:
XCY00001
LinkDB
All DBs
Position
5959829..5960347
Genome browser
AA seq
172 aa
AA seq
DB search
MSSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGREELLTPREP
RAFLVAIAKGLLFDYFRRAALEQAYLAELMLIPEGEQPSVEEQQLILEDLKAIDRLLGQL
STKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGIRQCYIALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcagcccaaagccctcacagtgagctcgtcggtgcgttgtaccgcgaccatcgc
ggctggctgctggcctggctgcggcgcaacgtggcctgcccgcaacgcgccgaagacctg
agccaggacaccttcgtgcgcctgctcggtcgcgaggaactgctgacaccccgcgagccc
cgggcctttctggtggcgatcgccaaaggcctgctgttcgactacttccgtcgcgcggca
ctggaacaggcttatctcgctgagttgatgctgatccccgaaggcgagcagccttcggtt
gaagagcagcaattgatcctcgaagacctcaaggccatcgaccgcctgctcggccaactg
tcgaccaaggctcgcgccgctttcctttataaccgtctcgacggcctgacccatgccgag
atcgccgacaaactcggcgtgtcggtgccgcgcgtacgtcagtatctggcccagggtatc
cgccagtgctacatcgccctgtacggtgagccgacatga
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