KEGG   Pseudomonas sp. Stari2: NH234_27360
Entry
NH234_27360       CDS       T10554                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psdt  Pseudomonas sp. Stari2
Pathway
psdt02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psdt00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    NH234_27360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psdt03021]
    NH234_27360
Transcription machinery [BR:psdt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     NH234_27360
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 HTH_24 Rv2175c_wHTH Sigma70_ECF HTH_17 HTH_3 PhyR_sigma-like FaeA HTH_31 Sigma70_r3 HTH_11 PCI HTH_5
Other DBs
NCBI-ProteinID: XCY00001
LinkDB
Position
5959829..5960347
AA seq 172 aa
MSSAQSPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGREELLTPREP
RAFLVAIAKGLLFDYFRRAALEQAYLAELMLIPEGEQPSVEEQQLILEDLKAIDRLLGQL
STKARAAFLYNRLDGLTHAEIADKLGVSVPRVRQYLAQGIRQCYIALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtcgtcagcccaaagccctcacagtgagctcgtcggtgcgttgtaccgcgaccatcgc
ggctggctgctggcctggctgcggcgcaacgtggcctgcccgcaacgcgccgaagacctg
agccaggacaccttcgtgcgcctgctcggtcgcgaggaactgctgacaccccgcgagccc
cgggcctttctggtggcgatcgccaaaggcctgctgttcgactacttccgtcgcgcggca
ctggaacaggcttatctcgctgagttgatgctgatccccgaaggcgagcagccttcggtt
gaagagcagcaattgatcctcgaagacctcaaggccatcgaccgcctgctcggccaactg
tcgaccaaggctcgcgccgctttcctttataaccgtctcgacggcctgacccatgccgag
atcgccgacaaactcggcgtgtcggtgccgcgcgtacgtcagtatctggcccagggtatc
cgccagtgctacatcgccctgtacggtgagccgacatga

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