Pseudomonas sp. DTU12.3: C2E19_06140
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Entry
C2E19_06140 CDS
T11626
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psdu Pseudomonas sp. DTU12.3
Pathway
psdu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psdu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C2E19_06140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdu03021
]
C2E19_06140
Transcription machinery [BR:
psdu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C2E19_06140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_20
HTH_24
HTH_28
GerE
HTH_5
HTH_10
HTH_40
HTH_7
HTH_36
HTH_38
Trp_repressor
HTH_IclR
HTH_26
HTH_11
TnsD
CHASE3
DUF1492
Motif
Other DBs
NCBI-ProteinID:
QAX83446
LinkDB
All DBs
Position
complement(1374751..1375239)
Genome browser
AA seq
162 aa
AA seq
DB search
MPSAHPVEALYQAHHSWLTGWLRRKLGCPHSAADLAQDTFIKVLTAREAPLIIEPRAFLT
TLAKRVLFNHYRRQDLERAYLDTLAQMPEMLAPSEEDKAIILQTLMELDQLLDGLPRQVK
RAFLLAQIDGLTYPQIAAEIGISVATVKRHLNKAAMRCYFAL
NT seq
489 nt
NT seq
+upstream
nt +downstream
nt
ttgccgtccgcccatcccgtcgaagcgctttatcaagcccaccacagctggctcaccggc
tggctgcggcgcaaactcggctgcccgcacagcgcggcggatctggcgcaggacaccttc
atcaaagtgctgacggcccgcgaagcgccgttgatcatcgagccgcgggcgttcctcacg
acgttggccaaacgcgtgttgttcaaccattaccgccgccaggacctcgaacgcgcttac
ctcgataccctcgcgcagatgccggaaatgctcgcgccgtccgaagaagacaaagcgatc
atcctgcaaaccctgatggagctggatcaattgctcgacggcttgccgcgtcaggtcaaa
cgcgcgtttctgctggcacagatcgatggcctgacctatccacagatcgccgccgaaatc
ggcatctccgtggccacggtcaaacgtcatctgaacaaagcggcaatgcgctgctatttc
gcgctatga
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integrated database retrieval system
