Pseudomonas sp. DTU12.3: C2E19_28590
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Entry
C2E19_28590 CDS
T11626
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psdu Pseudomonas sp. DTU12.3
Pathway
psdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2E19_28590 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdu03021
]
C2E19_28590 (rho)
03019 Messenger RNA biogenesis [BR:
psdu03019
]
C2E19_28590 (rho)
Transcription machinery [BR:
psdu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C2E19_28590 (rho)
Messenger RNA biogenesis [BR:
psdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C2E19_28590 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
QAX87557
LinkDB
All DBs
Position
complement(6185184..6186443)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgctaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgctgacgcttcctacctggccggcccggacgatatctac
gtctcgccaagccagatccgccgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcggtatttcgctctgctcaaggtcgacacgatcaac
ttcgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacttgaccggtcgt
gtgatcgacctgtgcgccccgatcggcaaaggccagcgtggtctgatcgtcgcaccgccg
aaagccggtaaaacgatcatgctgcaaaacatcgcagcgaacatcgcccgtaacaaccct
gaagttcacctgatcgtgctgctgatcgacgagcgtccggaagaagtaaccgagatgcag
cgcaccgtgcgcggcgaagtggttgcctcgactttcgacgaaccgccgacccgtcacgtc
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagatgtg
gtgatcctgctcgactccatcacgcgtctggcccgtgcctacaacaccgtgattccaagc
tccggcaaggtcttgaccggtggtgtcgatgctcacgccctcgagaagccaaagcgtttc
ttcggtgctgcgcgtaacatcgaagaaggcggctcgctgaccattatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcctctggatcgcaagatcgccgagaagcgcgtgttcccggcgatcaacatc
aaccgctccggcacccgccgcgaagagttgctgactgccgacgacgagctgcagcgcatg
tggattctgcgcaagctgctgcacccgatggacgaagtcgcagcgatcgagttcctggtc
gacaagctgaaaacgaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa
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