Pseudomonas sp. DY-1: D6Z43_20380
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Entry
D6Z43_20380 CDS
T11625
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psdy Pseudomonas sp. DY-1
Pathway
psdy03420
Nucleotide excision repair
psdy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D6Z43_20380
03430 Mismatch repair
D6Z43_20380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psdy03400
]
D6Z43_20380
Enzymes [BR:
psdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D6Z43_20380
DNA repair and recombination proteins [BR:
psdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D6Z43_20380
MMR (mismatch excision repair)
Other MMR factors
D6Z43_20380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYF89383
LinkDB
All DBs
Position
complement(4314330..4316510)
Genome browser
AA seq
726 aa
AA seq
DB search
MHDDLSLLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSIL
SVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEAGLTENFQILDSDD
QQRLVKRVIRDLGLDEQRWPARQAQWFINGQKDEGIRPQHIQAGGDLFLGTMLKIYEAYE
AACARTGVIDFSELLLRALDLWRDRPSLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAK
GGQSLMVVGDDDQSIYGWRGARIENIQQFSSDFPDTEVIRLEQNYRSTAGILKAANALIA
NNQGRLGKELWTEGEDGEPIGLYAAFNEHDEARYVVESIESALKDGMARSEIAILYRSNA
QSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERVINVPPRGI
GEKTVESIREFSRVNEVSMWEAMRLMIANKALAGRASSALAAFMELIENLTAKCLEMPLH
LMTQTVIEQSGLVAYHKDEKGEKGQARVENLEELVSAARAFENEEPEDDLTPLQAFLSHA
SLEAGETQADAFEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSMEDPTRLEEERRL
AYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFVREVPPQLIREVRLNNSISRPMGSGS
RHGSIFDGAAVPETPFSLGQRVQHALFGEGTILNFEGAGAQARVQVKFESEGSKWLMLAY
AKLQPL
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgatctctccctcctcctgaactccctcaacgacgctcaacgccaggccgta
gcggcctcgctggggcgtcaactggtgcttgccggcgccggttccggcaagactcgcgtg
ctggtgcaccgcatcgcctggctgatccaggtggagcaggcctcgccgcactcgatcctg
tcggtgaccttcaccaacaaggccgcggccgaaatgcgccagcgcatcgagcaactgctg
gggatcaacccggcaggcatgtgggtcggcaccttccacggtctggcgcaccgcctgttg
cgcgcccactggcaggaagcgggcctgaccgagaacttccagatcctcgatagcgacgac
cagcagcggttggtcaagcgggtgattcgcgacctcggcctcgacgagcagcgctggccg
gcacgtcaggcacagtggttcatcaacggacagaaggacgagggcatccgtccgcagcac
atccaggccggcggcgacctgttcctcggcaccatgctgaagatctacgaagcctacgaa
gccgcctgtgcgcgcaccggggtaatcgacttctccgaactactgctgcgcgcccttgac
ctctggcgcgaccgtccgagcctgctggagcactaccagcgacgcttccgccatgtgctg
gtggacgaattccaggacaccaacgccgtgcagtacgcctggcttcgcctgcttgccaag
ggtggccagagcctgatggtggtgggcgacgacgaccagtcgatctatggctggcgcggt
gcgcggatcgagaacatccagcagttctccagcgacttcccggataccgaggtgattcgc
ctggagcagaattaccgctccaccgcaggcatcctcaaggccgccaacgccctcatcgcc
aacaatcaagggcgcctgggcaaggagctctggaccgagggcgaagacggcgaacccatt
ggcctgtatgccgcgttcaacgagcacgacgaagcccgctacgtggtggagagcatcgag
agcgccttgaaagacggcatggcccgcagcgaaatcgccatcctctatcgctccaacgcc
cagtcgcgggtgctggaagaggccctcctgcgggagaagattccctaccgcatctatggc
ggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcttacctgcgcctgctc
gacggtcgtggcaatgatgcggcgctggagcgggtaatcaacgtgccgccacgcggtatc
ggtgagaaaaccgtggagagcatccgcgagttctcccgcgtcaacgaagtctcgatgtgg
gaagcgatgcgcctgatgatcgccaacaaggccctggccggtcgcgcctccagcgccctg
gcggccttcatggagctgatcgagaacctgaccgcgaagtgcctggagatgcccctgcac
ctgatgacccagacggtcatcgagcagagtggcctggtggcgtaccacaaggacgagaag
ggcgagaagggccaggcccgggtggaaaacctggaagagctggtcagcgccgcccgcgcc
ttcgagaacgaagagcccgaggacgacctcacgccgctgcaggccttcctcagccacgcc
tcgctggaggccggggaaacccaggccgacgctttcgaggacagcgtacagctgatgacc
ctgcacagcgccaagggtctggagttccccctggtattcctggtgggcatggaagaaggc
ctgttcccgcacaagatgagcatggaagacccgacccgcctggaagaagagcgccgtctg
gcctatgtcggcgtcacccgtgccatgcagcgcctggtcctgacctacgccgaaacccgc
aggctctacggcagcgagacctacaacaaggtctcgcgcttcgtccgcgaagtgccgccg
cagctgattcgtgaagtgcgcctgaacaacagcatcagccgtcccatggggagcggtagc
cgccacggctccatcttcgacggtgccgccgtgccggaaacgcccttctccctgggccag
cgagtgcagcatgcgttgttcggcgagggcaccatcctcaacttcgaaggcgccggcgcc
caggcccgggtgcaggtgaagttcgagagcgaaggcagcaagtggctgatgctggcgtac
gccaagctgcagccgctctga
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