Pseudomonas sp. DY-1: D6Z43_21120
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Entry
D6Z43_21120 CDS
T11625
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psdy Pseudomonas sp. DY-1
Pathway
psdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D6Z43_21120 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psdy03021
]
D6Z43_21120 (rho)
03019 Messenger RNA biogenesis [BR:
psdy03019
]
D6Z43_21120 (rho)
Transcription machinery [BR:
psdy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D6Z43_21120 (rho)
Messenger RNA biogenesis [BR:
psdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D6Z43_21120 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AYF89527
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All DBs
Position
4471146..4472405
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPIGELLEMSDAMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
YDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTAEDELQRMWILRKLLHPMDEIAAIEFLLDKLKDTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattggcgaacttctggaaatgtccgacgca
atgggcctggagaacatggcccgttcgcgcaagcaggacatcatcttcgccctgctgaaa
aagcacgcgaagagcggcgaggagatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgccgactcttcctacctggccggccctgacgacatctac
gtctcgcccagccagatccgtcgcttcaacctgcgcacgggcgacactatcgtcggcaag
attcgtccgcccaaggaaggcgagcgttacttcgcgttgctcaaggtcgactccatcaac
tacgaccgccccgagaacgccaagaacaagatcctgttcgagaacctcacgcccctgttc
cccaatgagcgcctgaagatggaggccggcaacggctccaccgaagacctcaccggccgt
gtgatcgatctctgcgcaccgatcggcaagggccagcgcggcctgatcgtggcaccgccg
aaagcgggcaagacgatcatgctgcagaacatcgcggccaacatcacccgcaacaacccc
gagtgccacctgatcgtcctactgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggtgaagtggtcgcctccaccttcgacgagccgccgactcgccacgtg
caggttgccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactccattacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctcaccggtggtgtcgacgcccacgccctggagaagcccaagcgcttc
ttcggtgccgcgcgcaacatcgaggaaggcggctcgctgaccatcctcgccaccgcgctg
gtagaaaccggttcgaagatggatgaagtcatctacgaagagttcaagggcaccggcaac
atggaactgccgctggaccgtcgcattgccgagaagcgcgtgttcccggccatcaacatc
aacaagtccggtacccgccgcgaagagctgctgactgctgaagacgagctgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggatgagatcgccgccatcgagttcctgctc
gacaagctgaaagacaccaagaccaacgacgaattcttcctctcgatgaagcgcaagtaa
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