Pseudomonas sp. DY-1: D6Z43_26050
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Entry
D6Z43_26050 CDS
T11625
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psdy Pseudomonas sp. DY-1
Pathway
psdy03030
DNA replication
psdy03430
Mismatch repair
psdy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D6Z43_26050
03430 Mismatch repair
D6Z43_26050
03440 Homologous recombination
D6Z43_26050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psdy03032
]
D6Z43_26050
03400 DNA repair and recombination proteins [BR:
psdy03400
]
D6Z43_26050
Enzymes [BR:
psdy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D6Z43_26050
DNA replication proteins [BR:
psdy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D6Z43_26050
DNA repair and recombination proteins [BR:
psdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D6Z43_26050
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AYF90432
LinkDB
All DBs
Position
5532378..5535902
Genome browser
AA seq
1174 aa
AA seq
DB search
MTASFVHLRLHSEYSLVDGLVRVKPLVKAVAGAGMPAVAITDQSNMCSLVKFYKTAMGGG
IKPICGADIWLASPFEDGPLSRMTLLAMNAKGYRNLTELVSRGWSDGQSNGLVIIQREWV
KEAAEGLIALSGAKEGEIGMALLNNDPASAEAMLAEWQSVFPDRFYLELQRTSRINDEEH
VHAAVALASRCGAPLVATNDVRFIKPGDFEAHETRVCIGEGRVLDDPRRPRNYSDQQYLK
SPEEMAELFADIPEALENTVEIAKRCNIEVQLGKHFLPDFPTPNGMSIDDYLRHASFEGL
EERLAVLLPKETTPDYEEKRQLYIDRLEFELGTIIQMGFPGYFLIVADFIQWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
ADKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEAAFNQE
EALRDFLKVDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGTGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEMINREQEKLGKPLVDIDRIPLDDKKTYD
MLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCSNNGIDPNLSGNIFDLVEKFAGYGFNKSHSAAYGWVSYQTAWLKAHF
PAPFMAAVLTADMHNTDKVVTLIEECRHMKLRIVAPDVNNSEYRFTVDNDGQIVYGLGAI
KGVGEGPVEAITECRAEGGPFKDLFDFCNRVDLKRINKRTLEALIRGGALDRLGPFFSNE
PKAYQAGIDRNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGLFAEPEADMYANHRNAK
ELSLKERLKGEKETLGLYLTGHPIDEYEGEIRRFARQRIVELKPARDTQIIAGLIVNLRV
MKNKKGDKMGFITLDDRSGRIEASLFAEAFNTAQGLLQTDALVVVEGEVSHDDFSGGLRL
RAKRVLSLEEARTGLAESLRMKVDFSALQGDRLRWLAELCGRHRGSCPLTLDYSGNDAKA
VLQFGDNWRIAPADALIQALRDQFGRDNVFLHYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcttctttcgtccatctgcgtctgcattccgaatactccctggtagacggcctg
gtacgggtcaagccactggtcaaggccgtggcgggagcgggcatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagaccgccatgggcggcggc
atcaagcccatctgcggcgcggacatctggctggccagtcccttcgaggacggcccgctc
agccgcatgacgctcctggcgatgaacgccaagggttaccgcaatctgactgagctagtt
tcccgcggctggtccgacggtcagagcaatggcctggtgattatccagcgcgaatgggtg
aaggaggcggccgaaggcctgatcgccctgtccggtgccaaggagggcgagatcggcatg
gccctcctcaacaatgacccggcgagcgccgaggccatgctggctgagtggcagagtgtg
ttccccgaccgcttctatctggagctgcagcgtacctctcgcatcaacgacgaggagcac
gtccacgctgccgtcgccctggccagccgctgtggtgcgccgctcgtggccactaacgac
gtgcgtttcatcaagcccggcgacttcgaggcccacgagacccgcgtttgcatcggcgag
ggccgtgtcctcgatgacccgcgccgtcctcgcaactactccgatcagcagtacctcaag
tctcctgaggaaatggccgagctgttcgccgatattccggaagcgctggagaacaccgtc
gagattgccaagcgttgcaacatcgaggtgcaactgggcaagcacttcctgcccgatttc
cccacacccaacggcatgagcatcgatgactacctccgtcatgcctccttcgagggcctg
gaagagcgcctggccgtgctcttgccgaaggaaaccacgcccgattacgaagagaaacgc
cagctctacatcgatcgcctggagttcgaactcggcacgatcatccagatgggcttcccc
ggctacttcctgatcgttgcggacttcatccagtgggccaagaacaatggcgtgccggta
gggccgggccggggctcgggtgccggcagcctggttgcctacgtactgaagatcaccgac
ctcgacccattggcctacgacctgctgttcgagcgcttcctcaaccctgagcgggtatcc
atgcccgacttcgacgtcgacttttgcatggatggccgcgaccgggtgatcgactacgtg
gccgacaagtacggacgcaatgcggtgagccagatcatcaccttcggctccatggcggcc
aaggcggtggtgcgcgacgtggcgcgcgtgcagggcaagtcctacggattggcggatcgt
ctgtcgaagatgatcccgttcgaagtgggtatgaccctggaggccgcgttcaaccaggaa
gaagcgctgcgggacttcctcaaggtggacgaagaggcccaggaaatctgggacatggcc
ctgaagctggaaggcatcacccggggcaccggcaagcacgccggtggtgtagtgatcgcg
ccgaccaaacttaccgatttttctccgatcgcctgtgacgaagagggcaccggcctggtg
acccagttcgacaaggacgatgtggaggccgccggcctggtgaagttcgacttcctcggc
ctgcgtaccctgacgatcatcaagtgggccatggagatgatcaatcgggagcaggagaag
ctgggcaagcccctggtcgacatcgaccgcatcccgctggacgacaagaaaacctacgac
atgctgcagaaggcggagaccaccgcggtcttccagctcgaatcgcgcggcatgaaggaa
ctgatcaagaagctcaagcccgactgcctggaggacatgatcgccctggtggcgctgttc
cgcccgggtccgcttcagtccggcatggtggatgacttcatcaaccgcaagcacggccgt
gccgagctttcctacccgcaccccgactaccagtacgccggcctcgagccggtgctcaag
cccacctacggcatcatcctgtaccaggaacaggtgatgcagatcgctcaggtgatggcc
ggctacacccttggtggcgcggatatgctgcgacgtgccatgggtaagaagaaacccgag
gaaatggccaagcagcgcggcggcttcattgaaggctgctccaacaacggcatcgacccg
aacctctcgggcaacatcttcgacctggtggaaaagttcgccggctacggcttcaacaag
tcccactccgccgcctacggctgggtctcgtaccagaccgcgtggctcaaggctcacttc
ccggcacccttcatggccgcggtgctcactgcggatatgcacaacaccgataaggtggtg
acgctcatcgaagaatgccggcacatgaagctgcgtatcgtcgccccagacgtgaacaat
tccgaataccgcttcaccgtcgacaatgacggccagatcgtctacggcctgggcgccatc
aagggcgtgggtgagggaccggtggaggccattaccgaatgccgcgccgaaggtggtccg
ttcaaggacctgttcgacttctgcaaccgtgtcgacctcaagcgcatcaacaagcgcacc
ctggaggccctgattcggggtggagcgctcgatcgcctcggaccgttcttcagcaacgag
cccaaggcttatcaggctggcattgaccgcaaccgagcggtgctgctggccgccatggaa
gaggccatccaggcggcggagcagaccgctcgcagtcatgacagcgggcacatggacctc
ttcggcggcctgttcgccgagcctgaggccgacatgtacgccaatcaccgcaacgccaag
gagctatccctcaaggagcgcctgaagggcgagaaggaaaccctgggcctgtacctcacc
ggtcacccgatcgacgagtacgaaggcgagatccgccgcttcgcccgccagcgcatcgtc
gagctcaagccagcgcgcgacacccagatcattgccggcctgatcgtcaacttgcgggta
atgaagaacaagaaaggcgacaagatgggcttcatcacccttgacgaccgctccggccgc
atcgaagcctcgctcttcgccgaggccttcaacactgcccaggggctgctgcagaccgac
gccctggtggttgtcgaaggggaggtcagccatgacgatttctccggcggcctgcgcttg
cgcgccaagcgcgtgcttagcctggaagaggcgcgcaccggcctcgccgagagcctgcgc
atgaaagtggatttcagcgccctgcaaggcgatcgcttgcgctggttggctgaactttgc
ggccgccatcgcggctcctgcccgctgacgctggactacagcggtaatgacgcgaaggct
gtgctgcagttcggcgacaactggcgaatcgcaccggccgacgctttgattcaggcattg
cgtgaccagttcgggcgcgacaacgtcttcctgcactaccgctga
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integrated database retrieval system
