Pseudogulbenkiania sp. NH8B: NH8B_0280
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Entry
NH8B_0280 CDS
T01619
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pse03032
]
NH8B_0280 (topA)
03400 DNA repair and recombination proteins [BR:
pse03400
]
NH8B_0280 (topA)
Enzymes [BR:
pse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NH8B_0280 (topA)
DNA replication proteins [BR:
pse03032
]
Prokaryotic type
DNA Topoisomerases
NH8B_0280 (topA)
DNA repair and recombination proteins [BR:
pse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NH8B_0280 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
CoiA_N
Motif
Other DBs
NCBI-ProteinID:
BAK75129
LinkDB
All DBs
Position
complement(310519..312810)
Genome browser
AA seq
763 aa
AA seq
DB search
MPSSLLIVESPSKAKTLKKYLGQDFEVLASYGHVRDLVPKSGAVDPDKNFAMKYQLIPRN
AKHVDAITQAVAEADHIYLATDPDREGEAISWHLVQILNNKKLLKGKTAQRVVFHEITKN
AVLDAIANPRDISQELVDAQQARRALDYLVGFNLSPMLWKKIRRGLSAGRVQSPALRLIC
ERENEIRAFTEQEYWSIHLDSHKGRQKFGAKLFELGGNKLDQFDIPSEAVQADTLARLAE
QPATVSNVDKKKKTRNPAAPFTTSTLQQEAVRKLGMTTDRTMRTAQQLYEGVDIGQGTVG
LITYMRTDAVVLSNEALTEIRGYIESQFEPAFLPKAPVTFKNKSKNAQEAHEAIRPTSIE
RTPAAMKPFLTTDQFKLYEMIWKRTLACQMAPAKFDTTSVDITVGEGVFRATGQVQTFAG
FLAVYEEDVDDAEDEDNAKLPALEVGDVLPVDKLYGEQHFTQPPPRFSEASLVKALEEFG
IGRPSTYASIISTLKDREYVVLDKKRFLPTDTGEIVNKFLTEHFGQYVDYNFTAKLEDQL
DEIANGRREWVPVMETFWKGLAKQLSEKESLSRAEVTTESLDEACPKCSKPLQIKFGKRG
RFIACTGYPECDYTRDIGETAESAAAAAEEPTVIEGRTCPECGGALHIKKGRYGKFIGCA
NYPKCKHIEPLEKPRDTGVTCPECKTGSLIERKSRYGKLFYSCNTYPKCKYATWNPPVAE
PCPKCHWPILTIKTTKRRGTEKVCPQKECGYSEVIAPPEAKEA
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgccctcgagcctattgatcgttgagtcgccgtccaaggccaaaacgctgaaaaaatac
ctgggtcaggacttcgaagtcctcgcctcctacggccacgtccgcgacctggtgccgaaa
agcggcgcggtcgacccggacaagaacttcgccatgaagtaccagctgatcccgcgcaac
gccaagcacgtggacgccatcacccaggcggtggccgaggccgatcacatctatctggca
actgacccggaccgcgaaggcgaggccatttcctggcacctggtacagatcctcaacaac
aagaagctgctgaagggcaagaccgcacagcgcgtggtgttccacgagatcaccaagaac
gccgtgctcgacgccatcgccaacccgcgcgacatctcgcaggagctggtcgacgcgcag
caggcgcgccgcgcgctcgactacctggtcggcttcaacctgtcgccgatgctgtggaag
aagatccgccgcgggctgtccgccggccgcgtgcagagcccggcgctgcgcctgatctgc
gagcgcgagaacgaaatccgcgccttcaccgagcaggaatactggtcgatccacctcgac
agccacaagggccggcagaagttcggcgccaagctgttcgagctcggcggcaacaagctc
gaccagttcgacatcccgagcgaggcggtccaggccgacacgctggcgcgcctggcagag
cagccggccaccgtcagcaacgtcgacaagaagaagaaaacccgcaacccggccgcgccg
ttcaccacctcgacgctgcagcaggaggcggtgcgcaagctcggcatgaccaccgaccgc
accatgcgcacggcgcagcagctgtacgagggcgtcgacatcggccagggcacggtcggt
ctcatcacctacatgcgtaccgacgccgtggtgctgtcgaacgaggccctgaccgaaatc
cgcggctacatcgagagccagttcgagccggccttcctgcccaaggccccggtcaccttc
aagaacaagtcgaagaacgcccaggaagcccacgaggcgatccgcccgacctcgatcgag
cgcaccccggcggcgatgaagccgttcttgaccaccgaccagttcaagctctacgagatg
atctggaagcgcaccctggcctgccagatggcgccggccaagttcgacaccaccagcgtc
gacatcaccgtcggcgagggcgtgttccgcgccacgggccaggtacagaccttcgccggc
ttcctcgcggtgtacgaggaagacgtcgacgacgccgaggacgaggacaacgccaagctg
ccggcgctggaggtgggcgacgtgctgccggtggacaagctctacggcgaacagcacttc
acccagccgccgccgcgcttctccgaggccagcctggtcaaggcgctggaagaattcggc
atcggccgcccgtccacctacgccagcatcatctcgacgctgaaggaccgcgagtacgtg
gtgctcgacaagaagcgcttcctgccgaccgacaccggcgagatcgtcaacaagttcctc
accgagcacttcggccagtacgtcgactacaacttcaccgccaagctggaagaccagctc
gacgagatcgccaacggccggcgcgagtgggtgccggtgatggagacgttctggaagggg
ctggccaagcagctgagcgagaaggaaagcctgtcgcgcgccgaggtcaccaccgagagc
ctggacgaggcctgcccgaagtgcagcaagccgctgcagatcaagttcggcaagcgcggc
cgcttcatcgcctgcaccggctaccccgagtgcgactacacccgcgacatcggcgagacc
gccgagagcgcggcggcggcggcggaagaaccgacggtgatcgaggggcgcacctgcccg
gaatgcggcggcgcgctgcacatcaagaagggccgctacggcaagttcatcggctgtgcc
aactaccccaagtgcaagcacatcgaaccgctcgagaagccgcgcgacaccggcgtgacc
tgcccggaatgcaagaccggcagcctgatcgagcgcaagagccgctacggcaagctgttc
tacagctgcaatacctatcccaagtgcaagtacgccacctggaacccgccggtggccgag
ccctgcccgaagtgccactggccgatcctgaccatcaagaccaccaagcggcgcggcacc
gagaaggtctgcccgcagaaggagtgtggctacagcgaggtgatcgccccgccggaagcc
aaggaagcctga
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