Pseudogulbenkiania sp. NH8B: NH8B_1362
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Entry
NH8B_1362 CDS
T01619
Name
(GenBank) protein of unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pse03016
]
NH8B_1362
Enzymes [BR:
pse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NH8B_1362
Transfer RNA biogenesis [BR:
pse03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NH8B_1362
Prokaryotic type
tRNA splicing ligases
NH8B_1362
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAK76184
LinkDB
All DBs
Position
1393720..1395153
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AA seq
477 aa
AA seq
DB search
MDIARLRQAGPYEWTLAPSRAEAGGEVRLFADAELLRGMDDKVLEQIRNVARLPGLVGAA
MTMPDAHWGYGFPIGGVAAFDADAGGVVSAGGVGFDISCGIRCLRTDLSWEQLAPQRHHL
ADSLFREIPAGVGEEGRLRLSVRELDQVMRQGAHWAVAQGFGPADDLPYIEERGCVGGAE
PGWVSDLAKKRQLGEMGTLGSGNHYLEVQVVDRIHDEAAAVAFGLRVGQVLVSIHCGSRG
LGHQIGTDYLLLLAKSAASLGLTLPDRELACAPIRSEAGQHYLGAMNSAINCALANRQIL
AALTRRVLARYWPSARLDTLFDVSHNTCKVERHRVEGRERTLYVHRKGATRAFGAGHAGL
PDAYRAVGQPVIIGGSMGTGSYILAGNPPGQNHAFASASHGAGRAMSRHQALKFWHGRQL
LDDLAAQGILIRTGSLRGAAEEAPGAYKDVDRVAEVTEAAGLARRVAFLRPKICIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgcgcgcttgcggcaggctgggccgtacgagtggacgctggcgccgtcccgc
gccgaggcgggcggcgaggtgcggctgttcgccgacgccgagctgttgcgcggcatggac
gacaaggtgctggagcagatccgcaacgtggcgcggctgccggggctggtgggcgcggcg
atgaccatgcccgacgcgcactggggctacggcttcccgatcggcggcgtggccgccttc
gatgccgacgccggcggggtggtgtcggcgggcggcgtgggtttcgatatctcgtgcggc
atccgctgcctgcgcaccgacctgagctgggagcagctggcgccgcaacggcaccacctg
gccgacagcctgttccgcgagattccggccggggtcggcgaagaagggcggctgcggctg
tccgtcagggagctcgaccaggtgatgcggcagggcgcgcactgggcggtggcacagggt
tttggcccggccgacgatctgccctacatcgaggagcgcggttgtgtcggcggcgccgag
cccggctgggtgtcggacctggccaagaagcgccagctgggcgagatgggcacgctgggt
tccggcaaccattacctggaagtgcaggtggtggaccgcatccacgacgaggccgcggcg
gtggccttcggcctccgggtggggcaggtgctggtgtcgatccactgcggctcgcgcggg
ctcgggcaccagatcggcaccgattacctgttgctgctggccaagtcggcggccagcctc
ggcttgacgctgccggaccgcgagctcgcctgcgcgccgatccgctccgaggccgggcag
cactacctaggcgcgatgaacagcgccatcaactgcgcgctggctaaccgccagatcctg
gccgcgctgacgcggcgcgtgctggcgcgctattggccgagcgcccgtctcgacacgctg
ttcgacgtgtcacacaacacctgcaaggtggagcggcaccgcgtggagggacgcgaacgc
acgctgtacgtgcaccgcaagggcgcgacgcgcgccttcggtgcgggccacgccggcctg
cccgacgcctaccgcgcggtcggccagccagtgatcatcggcggcagcatgggcaccggc
tcctacatcctggccggcaacccgcccgggcagaaccacgccttcgcctcggccagccac
ggcgccgggcgcgccatgagccgccaccaggcgctgaagttctggcacggccggcagctg
ctggacgatctggcggcgcagggtatcctgatccgcaccggctcgctgcgcggcgcggcg
gaagaggcgccgggggcgtacaaggacgtcgaccgcgtggcggaagtgaccgaggccgcc
gggctggcgcggcgcgtggcgtttctgagaccgaagatttgcatcaaggggtga
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