Pseudogulbenkiania sp. NH8B: NH8B_1589
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Entry
NH8B_1589 CDS
T01619
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pse03019
]
NH8B_1589 (hrpA)
Enzymes [BR:
pse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NH8B_1589 (hrpA)
Messenger RNA biogenesis [BR:
pse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NH8B_1589 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_23
FtsK_SpoIIIE
AAA_30
NACHT
T2SSE
PhoH
Trypco1
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
BAK76411
UniProt:
G2J2N5
LinkDB
All DBs
Position
complement(1665479..1669423)
Genome browser
AA seq
1314 aa
AA seq
DB search
MTTTRPLAELKAALPSCLIRDRHGLKRKLADVEQRLKKQQPSDKLLADVAQQIARSQGRA
EARSANLPKPEFDLALPVNQKREEIRAAIAKHQVVIICGETGSGKTTQIPKICLELGRGV
YGLIGHTQPRRLAARSVATRIAQELGSELGAHVGFKVRFTDKLSDKSVIKLMTDGILLAE
TQTDRYLEAYDTIIIDEAHERSLNIDFLLGYLKQMLPRRPDLKVIVTSATIDAERFARHF
DGAPVIEVSGRTFPVEVRYRPLKERDEDEREVEMEDAIVDAVDEISRHGPGDMLVFLPGE
REIRDTAEKLRKSGIRGYEILPLFARLSNEDQQKIFKPSGGRRIVLATNVAETSLTVPGI
KYVIDTGLARLNRYSPRAKVEQLQVEKISQAAARQRAGRCGRVEAGVCVRLYGEDDFNAR
PAFTDPEIVRSNLAAVILRMAALRLGRVDDFPFLEAPSSRLIADGYQVLTELGAVDEKSE
LTAVGKELARLPIDPKIGRMLLAARDLGCVREVLIIAAALSIQDPRERPFEAREAAERAQ
QKFADEKSDFLSFLHLWDFFQDALKHKKSNRQLINLCHEHFLSYLRMREWRELHGQLAEI
AAELGLIQRHEAHADAEPSANLEQLSVKKRQQLDAVAYERLHQALLTGLIGNLGMKSQES
DDYLGTRGVHFHVFPGSGLKKAKPKWLVAAELVETTKLYARCVGKVEPEWVEKLAPHLIK
YHYFDPHWEKTRGEVVASERVTLYGLTLVPRRPVSYGRIAPEEARELFIRGALVAMEYVS
NAPWFQRNQQLIREVEQLEHKARRQDVLVDEDALFAFYAERIPAHVVDAASFEAWRKEAE
QADPKRLFLTREELMRHAAQHVTVNQFPEWLEHEDGKLRLKYRFEPNHPLDGVTVDVPLA
ILNRLEPAPFEWLVPGMIREKLQLMIKSLPKQVRRTCVPVPDFVTRFLSANPDTTQPIAP
QLARFILRETGGVKVAVDDFDLATLPLHLLFNFRVIDDGKQEIGLGRDLLALQKQFGQAA
QLTFRDTSAEFERDDVTSWDFGELPAAIQFARGRQQLTGYPALTLETDKVAIRLYDTEYT
ASRAHRQGVVRLLQLQLKEQMKQLGKGLPGMTQLGLQLRGVANVDDLLADAIACICDRAF
IGDDEPPRTEKAFNDQKARARTRLPAVIQAVTAYLNQIAGEYQALQPKLAKHKLGRELTE
QLGRLVYKGFLSATPWSQLPHLPRYLKAMSLRMDKQVANAQRDGQRAAEIRQLWTLWETR
LAEAEDKGEATPALAEFRWKIEELRVSLFAQELKTPYPVSLKRLMKEWETISGK
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacccgcccgctggccgaactgaaggccgccctgccctcctgcctgatccgc
gaccgtcacggtctgaaacgcaagctggccgacgtcgaacaacggctgaagaaacagcag
ccgtccgacaagctgctggccgacgtggcgcagcagatcgcccgctcgcagggccgcgcc
gaagcgcgttcggccaacctgcccaagccggaattcgacctcgcgctgccggtcaaccag
aagcgcgaggagattcgcgccgccatcgccaaacaccaagtggtgatcatctgcggcgag
accggctcgggcaagaccacgcagatccccaagatctgcctggagctgggccgcggcgtg
tacgggctgatcggccacacccagccgcgccggctcgccgcgcgctcggtggcgacgcgc
atcgcgcaggagctgggcagcgaactgggtgcccacgtcggcttcaaggtgcgcttcacc
gacaagctctcggacaaatccgtcatcaagctgatgaccgacggcatcctgctggcggaa
acccagaccgaccgctacctcgaagcctacgacaccatcatcatcgacgaggcgcacgag
cgcagcctcaacatcgacttcctcttgggctacctcaagcagatgctgccgcgtcggccc
gacctgaaggtgattgtcacctcggccaccatcgacgccgagcgcttcgcacgccacttc
gacggcgccccggtgatcgaggtctccggccgcaccttcccggtggaggtgcgctaccgc
ccgctcaaggagcgtgacgaggacgagcgtgaagtggaaatggaagacgccatcgtcgac
gcggtggacgaaatctcgcgccacggcccgggcgacatgctggtgttcctgcccggcgag
cgcgagattcgtgacacggcggagaagctgcgcaagtccggcatccgcggctacgagatc
ctgccgctgttcgcccgcctctccaacgaagaccagcagaagatcttcaagccgtcgggc
ggacgacgcatcgtgctcgccaccaacgtggcggaaacctcgctcaccgtgcccggcatc
aagtacgtgatcgacaccggcctcgcccgcctcaaccgttactcgccgcgcgccaaggtc
gagcagctgcaagtcgaaaagatttcccaggcggcggcgcgccagcgtgccggccgctgc
ggccgggtcgaggccggcgtctgcgtacggctttacggcgaagacgacttcaacgcccgc
ccggcgttcaccgacccggaaatcgtgcgctccaacctcgccgccgtgatcctgcgcatg
gcggcgctccgcctcggccgcgtcgacgacttccccttcctcgaagcgccgtcgtcgcgc
ctgatcgccgacggctaccaggtgctgaccgagctgggcgcggtggatgagaagagcgag
ctgactgcggtcggcaaggaactggcgcggctgccgatcgaccccaagatcggccgcatg
ctactcgccgcgcgcgatctcggctgcgtgcgcgaggtgctgatcatcgccgccgcgctc
tccatccaggacccgcgtgagcggccgttcgaagcgcgcgaggcggccgagcgggcgcag
cagaaattcgccgacgagaaatcggacttcctgtccttcctgcacctgtgggatttcttc
caggacgcgctcaagcacaagaagtccaaccgccagctcatcaacctgtgccacgagcat
ttcctgtcctatctcaggatgcgcgaatggcgcgaactgcacggccagctggccgagatc
gccgccgagctggggctgatccagcgccacgaggcacacgccgacgccgagccttcggcc
aacctcgagcagcttagcgtcaagaagcgccagcagctcgacgccgtggcctacgagcgc
ctgcaccaggcgctgctgaccggcctgatcggcaacctcggcatgaaatcgcaggagagc
gacgactacctcggcacgcgcggcgtgcatttccacgtcttccccggctccggcctgaag
aaggccaagccgaaatggctggtggcggccgaactggtggaaaccaccaagctctacgcc
cgctgcgtcggcaaggtggagccggagtgggtggagaaactcgccccgcacctgatcaag
taccactacttcgacccgcactgggaaaaaacccgcggcgaagtggtggcgagcgagcgc
gtcacgctctacggcctgaccctggtgccgcgccgcccggtcagctacggccgcatcgca
cccgaggaagcgcgcgaactgttcatccgcggcgcgctggtggcgatggagtacgtcagc
aacgcgccctggttccagcgcaaccagcagctcatccgcgaggtcgagcagctcgaacac
aaggcgcggcgccaggacgtgctggtggacgaagacgcgctgttcgccttctatgccgag
cgcattccggcgcacgtggtcgacgccgccagtttcgaagcctggcgcaaagaggccgag
caggccgaccccaagcggctgttcctgacgcgcgaagagctgatgcgccacgccgcccag
cacgtcaccgtcaaccagttcccggaatggctcgagcacgaagacggcaagctgcgcctg
aagtaccgcttcgaacccaaccatccgctcgacggcgtcaccgtggacgtgccgctcgcc
atcctcaaccggctcgagccggcgccgttcgaatggctggtgcccggcatgatccgcgaa
aaactgcagctgatgatcaagagcctgcccaagcaggtgcgccgcacctgcgtgccggta
ccggatttcgtcacgcgcttcctttcggccaaccccgacaccacacagccgatcgccccg
cagctggcacgcttcatcctgcgcgaaaccggcggcgtgaaagtggccgtggacgacttc
gacctcgccacgctaccgctgcacctgctgttcaacttccgcgtcatcgacgacggcaag
caggaaatcggcctcggccgcgatctgctcgctctgcagaagcagttcggccaggccgcg
cagctcaccttccgcgacacctcggccgagttcgagcgcgacgacgtcaccagctgggac
ttcggcgaactgccggcggcgatccagttcgcccgcggccgccagcagctcaccggctac
cccgcactgacgctggaaaccgacaaggtggcgatccgcctctacgacaccgaatacacc
gccagccgcgcccaccgccagggtgtggtgcggctgcttcagctgcagctcaaggagcag
atgaagcagctcggcaagggcctgcccggcatgacccagctcggcctgcaattgcggggc
gtggccaacgtcgacgacctgctggccgacgccatcgcctgcatctgcgaccgtgccttc
atcggcgacgacgagccgccgcgcaccgagaaagccttcaacgaccagaaggcgcgcgcg
cgcacccggctgccggcggtgatccaggcggtgaccgcctacctcaaccagatcgccggc
gaataccaggcgctgcaacccaagctcgccaagcacaaactcggccgcgaactgaccgaa
caactcggccgcctggtctacaagggcttcctctccgccacgccgtggagccagctgccg
cacctgccgcgctacctgaaggcgatgagcctgcgcatggacaagcaggtggccaacgct
cagcgcgacggtcagcgtgccgccgagatccgccagctctggacgctgtgggaaacccgc
ctggccgaagccgaagacaagggcgaggcaaccccggcgctcgccgagttccgctggaaa
atcgaggagttgcgcgtcagcctgtttgcccaagagctgaaaacaccttaccctgtttcg
ctcaagcgtttgatgaaagaatgggaaaccatttcgggtaaataa
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