Pseudogulbenkiania sp. NH8B: NH8B_2848
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Entry
NH8B_2848 CDS
T01619
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH8B_2848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pse03019
]
NH8B_2848
03016 Transfer RNA biogenesis [BR:
pse03016
]
NH8B_2848
Enzymes [BR:
pse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NH8B_2848
Messenger RNA biogenesis [BR:
pse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NH8B_2848
Transfer RNA biogenesis [BR:
pse03016
]
Prokaryotic type
tRNA degradation factors
NH8B_2848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
NuiA_2
RTX_C
Motif
Other DBs
NCBI-ProteinID:
BAK77641
LinkDB
All DBs
Position
complement(3011660..3013807)
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AA seq
715 aa
AA seq
DB search
MFNKISKTFQYGRHTVTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLT
VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSL
NPEIDSDIPAMIGASAALAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLDLVVA
GTHRAVLMVESEAKELPEAVMLGAVVFGHDQMQAAIKAINELADEVNPVMWDWSASAQNN
ELIAKVREVSGEKIANAFRIRQKQARTQVLAEAWADVKAALITEETDTLTANEIKGIFKS
LEAEIVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQ
RDEQIIDALAGEYTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQVLPSAD
EFGYSMRVVSEITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFAVLT
DILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMKE
AVEGPQQLSTHAPRLFVMKINPDKIREVIGKGGETIRSITKDTGTEINIEEDGTITIASV
TQEGADAAKKRIEEITVEVEVGKIYEGTVVKILDNNVGAIVSILPGKDGLVHISQIANER
IKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEDEAKTARETADSFGLKAGS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaacaagattagcaaaaccttccagtacggccgccacaccgtgaccctggaaacc
ggtgaagtggcccgtcaggcctccggcgccgttctcgtcaccatggaagacaccgtggtg
ctggtgtccgtggtcggctcgcaaaacgtcaagccgggccaggatttcttcccgctgacc
gtcgactatctcgagcgcacctacgccgccggcaagatcccgggcggcttcttcaagcgc
gagggcaagcagtccgagaaggaaatcctgaccagccgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggcttctaccacgacgtgcagattgtcgccacggtgatgtcgctg
aacccggaaatcgattccgacatccccgcgatgatcggcgcttccgctgcgctggcgatc
tccggtctgccgttcaacggcccgatcggcgccgcccgcgtcggctacgccaacggtgac
tacatcctcaacccgaccaagaccgaactggaaacctcccagctcgacctggttgttgcc
ggtacccatcgtgccgtgctgatggtcgaatccgaagccaaggagctgccggaagccgtg
atgctgggcgccgtggtgttcggccacgaccagatgcaggccgcgatcaaggccatcaac
gagctggccgacgaagtcaatccggtaatgtgggactggtccgcctcggcccagaacaac
gagctgatcgccaaggtgcgtgaagtgtcgggcgagaaaatcgccaacgccttccgtatc
cgccagaagcaggcgcgtacgcaggtgctagctgaagcctgggccgacgtcaaggcagcg
ctgatcactgaagaaaccgacaccctgaccgccaacgagatcaagggcatcttcaagagc
ctggaagccgagatcgtgcgcggccagatcctggccggcgagccgcgcatcgacggccgc
gacactcgcaccgtgcgcccgatcgccatccgcaccggcgtgttgccgcgtacccacggt
tcggcgctgttcactcgtggtgaaacccaggccatggtggtaaccacgctgggcacccag
cgcgacgagcagatcatcgacgcgctggccggcgagtacaccgaccgcttcatgctgcac
tacaacttcccgccgtactcgaccggcgaagccggtcgcatgggcccgccaaagcgccgc
gaaatcggccatggccgtctggccaagcgtgccctggcgcaggtgctgccgtccgccgac
gagttcggttactcgatgcgcgtggtgtcggaaatcaccgagtccaacggctcctcgtcg
atggcgtcggtatgcggtggctgcttggcgctgttgaacgccggcgtgccgctgaaggcg
cacgtggctggtatcgccatgggcctgatcctggagggcaaccgtttcgccgtgctgacc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgaccgcgctgcagatggatatcaagatccagggcatcaccaaggaaatcatg
caggtcgcactcgaccaggccaaggaaggccgcctgcacatcctcggcctgatgaaggaa
gccgtggagggtccgcagcagctgtccacccacgctccgcgcctgttcgtgatgaagatc
aacccggacaagatccgtgaagtgatcggcaagggtggcgagaccatccgctcgatcacc
aaggataccggtaccgagatcaacatcgaggaagacggcaccatcaccatcgcttcggtg
acccaggaaggtgccgatgccgccaagaagcgcatcgaggaaatcaccgtcgaagtcgaa
gtgggcaagatctacgaaggcaccgtggtgaagattctcgacaacaacgtcggcgccatc
gtatcgatcctgccgggcaaggatggtctggtacacatctcgcagatcgccaacgagcgt
atcaagaacgtgtccgactacctgaaagaaggccaggtggtgaaggtcaaggcgatcgag
atggacgaccgcggccgtatccgcctgtcgatcaaggccctgctggaagacgaagccaag
acggcgcgcgaaaccgccgactccttcggtctgaaggccggcagctga
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