Pseudogulbenkiania sp. NH8B: NH8B_2915
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Entry
NH8B_2915 CDS
T01619
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH8B_2915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pse03019
]
NH8B_2915
03009 Ribosome biogenesis [BR:
pse03009
]
NH8B_2915
Enzymes [BR:
pse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NH8B_2915
Messenger RNA biogenesis [BR:
pse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NH8B_2915
Ribosome biogenesis [BR:
pse03009
]
Prokaryotic type
rRNA processing factors
NH8B_2915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAK77706
LinkDB
All DBs
Position
complement(3074076..3077120)
Genome browser
AA seq
1014 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFQNYEGGRPRIQDVLREGMEVMVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKDLLAQLEVPQGMSLIARTAGIGRTFEELQW
DLNYLLQLWRAIEGAAGAQSGPLLILQEGSLVIRAIRDYYQPDIGEILIDTEEIHEQARQ
FMAHVMPNTINRVKLYQDPVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSVD
VNSARATKGADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMEIQKNQREVENRL
RDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRAEIYSIEERLDVSVVLIPNIHLETPHY
KIVRVRHDDMSELGDLPSYSRVEIQEEEGTANFGQAKPKIERQEAAVKGITPLQPAPEVA
APAAPVEQPVAAAAAAAPVQSAGLIERLVGWFKSVLAPAEPAKPAPVEVKKEPVREQRNP
RSRQGDRRHGNQVRRDRDERRQGGAQQEDRRRPAAPAEARGEAGQEPQARQERAPRRERA
ERGERAERGERREPREPREPREARETPRPQPQAAEDKAPQSPRQQEPRRRPTPQVSEVEQ
VKEPVEQANLEEVKSAEMVPAVAEEGGETAERGERRRRRGRRDRNRREGIEAQRDGTLQQ
PTEAEGEVVAEAVAPTEAAVTEAVQVAEAPQVAEPVAVAADEVPVAKAAEVVVAAEAATE
VAVEAVAAEAVVEAPVAAVEPTVAGAPVAEPVQPEVAEVAEPEVAAPVVVATVEEVVAAE
VVTPAVAVEPVQAVEAPAEAVAEVAAEPVAAPLSQEPVAEVVAVAVETAAPVIAAAPAAI
DLGGLVMVSTKPTAEAQPQPLVEPVVTGVRRREAVRESLESGAPVELVQVETRH
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgtttaacgcaacgcaggccgaagagctgcgcgttgccattgtcgat
gggcagaagctcatcgatctggatatcgaaacggtcgggaaagaacagcgcaaggggaac
atctacaaaggtgtgatcacccgcatcgagccttcgctcgaggcctgcttcgtcgattac
ggcaccgaccgtcacggtttcctgcccttcaaggaagtctcccgttcctatttccagaac
tacgaaggtggccgtccgcgcattcaggacgtgttgcgcgaaggcatggaagtgatggtg
caggtcgagaaggacgagcgtggcaacaagggcgcggccttgacgacctacatcagcctg
gccggtcgctatctggtattgatgcccaacaacccgcgcggcggcggcgtttcgcgtcgc
atcgagggcgaggagcggcaggaactgaaggatctgctggcgcagctggaagtgccgcag
ggcatgagcctgatcgcgcgcaccgccggcatcggccgtaccttcgaagagctgcagtgg
gacctcaattacctgctgcaactgtggcgcgccatcgaaggcgccgccggcgcccagagc
ggtccgctgctgatcctgcaggagggcagcctggtgattcgcgccatccgcgactactac
cagccagacatcggcgaaatcctcatcgataccgaggaaatccacgagcaggcgcgccag
ttcatggcgcacgtgatgccgaacaccatcaaccgggtcaagctgtaccaggacccggtg
ccgctgttctcgcgcttccagatcgaacaccagattgaaaccgccttctcgcgcagcgtg
cagctgccgtccggcggtgccatcgtgatcgaccataccgaggcgctggtgtcggtggac
gtcaactcggcgcgcgccaccaagggcgcggacatcgaggagacggcgctcaagaccaac
cttgaagcggctgaggaaatcgcccgccagctgcgcctgcgcgacctgggcggcctgatc
gtgatcgacttcatcgacatggagattcagaagaaccagcgcgaggtggaaaaccgactg
cgcgacgtgctcaagcacgaccgcgcccgcgtgcagatgggcaagctgtcgcgcttcggc
cttctggaactgtcgcgtcagcgcctgcagccgagcctcggcgagaccagccacgagccg
tgcccgcgttgccacggcatcggcttcatccgcggcaccgagtcctccgcgctgcacatc
ctgcgcatcatccaggaagaggcgatgaaggagaacaccggtgcggtgcatgcccaggtg
ccggtggacgtcgctaccttcctgctcaacgagaagcgtgccgaaatctattcgatcgaa
gagcgcctcgatgtcagcgtggtgctgattccgaacatccatctggaaaccccgcattac
aagatcgtgcgcgtgcgccacgacgacatgagcgaactgggcgatctgccgagctacagt
cgtgtcgaaatccaggaggaagaaggcacggccaacttcggccaggccaagcccaagatc
gaacgtcaggaagccgcggtcaaggggattaccccgttgcagccggctccggaagtggcc
gctccggcggccccggtcgagcaaccggttgccgctgccgctgccgccgcgccggtgcag
agcgcgggtctgatcgaacgcctggtgggctggttcaagtcggtgctggcaccggcagag
ccggccaagccggcgccggtggaagtcaagaaggagccggtgcgcgaacagcgcaacccg
cgttcccgccagggcgatcgccgtcatggcaaccaggtgcgtcgtgaccgtgacgagcgc
cgtcagggtggtgcgcagcaggaagatcgtcgccgtccggccgcgccggccgaggcgcgt
ggcgaggctggccaggagccgcaagcgcgtcaggagcgtgcaccgcgccgcgagcgtgcc
gagcgaggcgaacgcgccgaacgcggagagcgtcgtgaaccgcgcgaaccgcgcgaaccg
cgtgaggcacgcgagaccccgcgtccgcagccgcaggctgccgaggacaaggcgccgcag
tcgccgcgtcagcaggaaccccgtcgtcgcccgaccccgcaggtcagcgaagtggagcag
gtcaaggagccggtcgagcaggctaatctggaggaggtgaagtcggccgagatggtgccg
gcggttgccgaggagggcggcgagaccgcggagcgcggcgagcgtcgtcgccgtcgtggc
cgtcgcgaccgtaaccgtcgtgaaggtatcgaggcacagcgtgacggcaccctgcagcaa
ccgaccgaggccgagggcgaggtcgtggcggaagccgtcgcgcccaccgaggcggccgtg
acggaagcggttcaggttgccgaggccccgcaagtggccgaaccggtggctgtcgctgct
gacgaggtgccggtagcgaaggcggccgaggtcgtggtcgctgctgaagccgcaaccgag
gtggcggtggaagcggttgccgcagaggcggttgtcgaggcgcccgtggcagcggtcgaa
ccgacggtagcgggagcgccggtcgccgaaccggtacagccggaggtggccgaagtcgcc
gaacctgaagtggcggcgccggtcgtcgtcgcgacggttgaggaggtggttgcggcggag
gtggtgacgcctgccgtggcggtcgagccggtccaggccgtcgaagcgcctgccgaagcg
gtggccgaggtagcggcggagccggttgcggcaccgttgagccaggagccggtggccgag
gttgttgccgtcgcggtggagacggccgctccggttatcgctgctgcgcctgcagcgatc
gacctgggtggtctggtcatggtcagcaccaagccgacggccgaggcgcagcctcagccg
ctggtcgagccggtggtgacgggggtgcgccgtcgtgaagcggtgcgcgagtcgctcgag
tccggcgccccggtggagctggtgcaggtggagacccggcactga
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