Pseudogulbenkiania sp. NH8B: NH8B_3051
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Entry
NH8B_3051 CDS
T01619
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03030
DNA replication
pse03430
Mismatch repair
pse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NH8B_3051 (dnaE)
03430 Mismatch repair
NH8B_3051 (dnaE)
03440 Homologous recombination
NH8B_3051 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pse03032
]
NH8B_3051 (dnaE)
03400 DNA repair and recombination proteins [BR:
pse03400
]
NH8B_3051 (dnaE)
Enzymes [BR:
pse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NH8B_3051 (dnaE)
DNA replication proteins [BR:
pse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NH8B_3051 (dnaE)
DNA repair and recombination proteins [BR:
pse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NH8B_3051 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
DUF7398
Motif
Other DBs
NCBI-ProteinID:
BAK77837
UniProt:
G2IWU5
LinkDB
All DBs
Position
3224418..3227861
Genome browser
AA seq
1147 aa
AA seq
DB search
MNPPRFVHLRLHSEFSVYDGIVRLDDAVKRAKKHGMPAIGMSDLMNLFGMVKFYKACRGN
GIKPIVSVDALISNDDDRDKPSRLLLTAKNRAGYLRLCDLLTQAVLHNQYRGRAELKREW
LENGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEVQRLDNPQIE
GVVQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKRRPKNFAECQY
FLSTEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGMTLDDYLVHLSKE
GLETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIVADFIVWAKNNGCPV
GPGRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDVDFCQDNRYRVIEYV
RQKYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIPAAPGKQYSLDDAVE
MEPILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKITDFCPVYQAAGDDA
VPVSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDPAFDTDLNLLEFTDPAAYQ
ILQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLGSGMVDDFILRKAGK
QEVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMAEH
RGKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSYQTAWLKAHHCAAFM
AATMSSELDNTDQLKVFYDDSVANKLKFLPPDVNESFYRFVPVDRQHIRYALGAVKGTGE
AAVEHIVAVRQESGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFDAIEPNRAKLFANVG
LAMEAAEQEAANANQGGLFDMFDADSAPTVEMVEVKLWPPAVQLAEEKLAIGYYLSGHPF
SAYEKEVRGFIKTPLSRITPRKEPQLIAGFVTGLRTKVGNRGKMAFIQLDDGSAKREVSV
FSESFDANRAKLREDTVLVIEGKVSEDSFNGGLRIIADKIYELGEARSRYARSLALQING
NADVARLRTTLGPFRSEDAGCPVRLSYNNGLAKGDLLLPPEWGVRLDDGLLLALQDWLGE
QAVKVLW
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctccccgtttcgtccacctgcgactccactccgaattctccgtctacgacggc
atcgtacgtctggacgacgccgtcaagcgcgccaagaagcacggcatgccggccatcggc
atgtccgatctgatgaacctgttcggcatggtcaagttctacaaagcctgccgcggcaac
ggcatcaagcccatcgtctcggtcgatgcactgatcagcaacgacgacgaccgcgacaag
ccctctcgcctgctgctcaccgccaagaaccgcgccggctacctacggctgtgcgatctg
ttgacgcaggcggtgctgcataaccagtaccgcggccgtgccgagctgaaacgcgagtgg
ctggaaaacggcgacaacagccagctgatctgcctctccggcgcgcatctgggcgatgtc
ggcatggcgctcgccaacggccagcgcgacgtggcggaacggcgtgcacgctactgggcc
gggctgttcccggacaatttctatctggaagtgcagcgcctcgacaatccgcagatcgaa
ggcgtggtgcagcagaccctgtggctcgccggcgagaccgggctgccggtggtggcgacg
catccgatccagttcatggatccggacgacttcaaggcgcacgaagcgcgggtgtgcatc
gccgagggctacaccctgggcgacaagcgccggccgaagaatttcgccgaatgccagtat
ttcctgtcgaccgaggagatgatcgagcgcttccacgacatcccggaagcgctggagaat
tcggtggaaatcgcgcgccgctgcaacatcacagtgcagctgggcaagaactacctgccg
gacttccccacccccgaaggcatgacgctggacgactacctggtccacttgtccaaggag
ggtctggagacgcggctggagaagctctaccccgacccggaggtccgtgccgccgagcgc
ccgcgctacgacgcgcgcctgaaaatcgagtgcgacaccatcgtccagatgggcttcccg
ggctacttcctgatcgtggccgacttcatcgtctgggccaagaacaacggctgcccggtg
ggcccggggcgaggttccggcgcgggctcgctggtggcgttcagcctcggcatcaccgac
atcgacccgctggcctacgcgctgctgttcgaacgcttcctgaacccggagcgggtgtcg
atgcctgacttcgacgtcgacttctgccaggacaaccgctaccgcgtcatcgagtacgtg
cgccagaagtacggcgccgaggcggtaagccagatcgccaccttcggcaccatggcggcc
aaggccgtggtgcgcgacgtcggccgcgtgctcgacctgccctacatgttctgcgacggc
gtttccaagctgatcccggcggcaccgggcaagcagtactcgctggacgacgcggtcgag
atggagccgattctgaaagaacggctggagaacgaggaagagctgcgcgagctgtgggaa
ctggcgaagaagctggaaggcctgacgcgcggcatcggcatgcacgccggcggcgtgctg
atcgcaccgggcaagatcaccgacttctgcccggtgtaccaggcggccggcgacgacgcc
gtgccggtctcgatgctggacaaggacgacgtcgagcagatcggcctggtgaagttcgac
tttctggggctgcgcaacctcaccatcatcgacctcgcggtcaagtacatcaaggcgctc
gatccggccttcgacaccgatctcaacctgctcgaattcaccgacccggccgcctaccag
atcctgcagaaggccaacaccacggcggtgttccagctcgaatcggacggcatgaagcgg
ctcttggaaaagctcaagcccgaccgtttcgaagatatcatcgccgtgctggcgctgtac
cggccgggcccgctcggctccggcatggtggacgacttcatcctgcgcaaggccggcaag
caggaggtcgattacttccaccctgacctgaccgcgtgtctcgaaccgacctacggcgtg
atcgtgtatcaggaacaggtgatgcagatctcgcagatcatcggcggctacaccctgggc
ggcgccgacatgctgcgccgtgcgatgggcaagaagaagccggaggagatggccgagcac
cgcggcaagatcgcgcagggcgccgccgccaagggctacgacccgaagttggccgaacag
ctgttcgacctgatggccaagttcgccgagtacggcttcaacaagtcgcacaccgccgcc
tacgccgtggtgtcgtaccagaccgcctggctcaaggcgcaccactgcgcggcgttcatg
gcggccaccatgtcgtcggaactggacaacaccgaccagctcaaggtgttctacgacgat
tcggtcgccaacaagctgaagttcctgccgcccgacgtcaacgagagcttctaccgtttc
gtgccggtggatcgccagcatatccgctacgcgctgggcgcggtcaagggcaccggcgag
gcggcggtggagcatatcgtcgcagtgcgccaggagagtgggccgttcaccgacctgttc
gatttctgccgccgcaccgacaagcgcaccgtcaacaagcgcaccatcgaatcgctgatc
cgcgccggggccttcgacgcgatcgaacccaaccgggccaagctgttcgccaacgtcggc
ctcgccatggaggcggccgagcaggaagccgccaacgccaaccagggcgggctgttcgac
atgttcgacgccgacagcgcgccgaccgtggagatggtcgaggtcaagctgtggccgccg
gcggtacagttggccgaagaaaaactcgccatcggctactacctctccggccacccgttc
tcggcctacgagaaggaggtgcgcggcttcatcaagaccccgctgtctcgcatcacgccg
cgcaaggagccgcagctgatcgccggcttcgtcaccggcctgcgcaccaaggtcggcaac
cgcggcaagatggcgttcatccagcttgacgacggcagcgccaagcgcgaggtcagcgtg
ttctcggaaagcttcgacgccaaccgcgccaagctgcgcgaagacacggtgctggtgatc
gagggcaaggtgagcgaggacagtttcaacggcggcctgcggatcatcgccgacaagatt
tacgagctgggcgaggcgcgcagccgctacgcccgcagcctggcgctgcagatcaacggc
aacgccgacgtggcgcggctgcgcaccacgctgggcccgttccgcagcgaagacgccggc
tgcccggtacggctgagctacaacaacggactggccaagggggatttgctgctgccgccg
gaatggggggtgcgcctggacgacggactgctgctggcgctacaggactggctgggcgag
caggcggtgaaggtgctgtggtaa
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