Pseudogulbenkiania sp. NH8B: NH8B_3373
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Entry
NH8B_3373 CDS
T01619
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH8B_3373 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pse03019
]
NH8B_3373 (rhlE)
Enzymes [BR:
pse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NH8B_3373 (rhlE)
Messenger RNA biogenesis [BR:
pse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NH8B_3373 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BAK78131
LinkDB
All DBs
Position
complement(3546079..3547446)
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AA seq
455 aa
AA seq
DB search
MSFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL
ERLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQ
TQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLP
RTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSH
LIRERQMGQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVKV
LVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGKQLE
AIEKLTRQTLKPQPVSGFWPSWLERPADEIAPPPRRSAENGRGNSRSASRAPMAAPVVEP
LRKPIDNGEPRKVFKVRVGKRQREIPALLLPPRYK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgccgagcttgggctgtcgccggagattctccgcgccatcgacgagcagggt
tattccgaacccacgccgatccaggccaaagccattccgctggtgctgtccgggcgcgat
ctccttgctgctgcgcagaccggcaccggcaaaacggcggcgttcatgctgccgatcctg
gaacgcctgaagaaatttgccagtaccagcgcctcgccggcgatgcacccggtgcgcgcg
ctgatcctgtcgccgacccgcgagctggccgaccagatcgcggtcaacgccgccgcttat
accaagtacctgccgctgcgctccaccgtggtgtttggcggcatgaacatggacccgcag
acacaggagctgcgtcgcggcgtcgagatactgatcgccacgccgggtcgtctgctcgac
cacgtcggccagaagacggtgcagctcaacaaggtcgacgtgctggtgctggacgaagcc
gaccgcatgctggacatgggcttcatcaacgacatccgcaagattctcggcatgctgccg
cgcacgcgccagaccctgctgttctccgccaccttcgcgccggagatcaagcgcctggcc
gaggagttcatgcacgacccgcagaccgtcgaagtggcacggcaaaattcaaccaacgcc
caggtcgagcagctggtgttctcggtggacagccagcgcaagcgctacctgctgtcgcac
ctgatccgcgagcgccagatgggccaggtcatcgtgttctgcaagaccaagctgtccgcc
gaccagctggcgcgcgatcttaagcgcgacggccatgccgccgaggcgatccacggcgac
aaggcgcaaggtgcccgcctggaaaccctgaccgcgttcaagaacggcgaggtcaaggtg
ctggtggcgaccgacgtggcggcgcgtggtctggatatctccgaactgccctacgtggtc
aacttcgagctgcccaacgcgccggaagactatgtgcaccgtatcggccgtaccggccgg
gccggcgcctccggcgtggccatctcgctgatggggcaggacgaaggcaagcagctcgag
gcgatcgagaagctgacgcggcagacgctgaagccgcagccggtgtccggcttctggccg
tcgtggctggagcgtccggccgacgagatcgcgccgccgccgcgccgctcggcggagaac
gggcgcggcaacagccgcagtgcatcgcgcgccccgatggcggcccccgtggtcgagccg
ctgcgcaagcccatcgacaacggcgaaccgcgcaaggtgttcaaggtacgcgttggcaag
cgccagcgcgagattccggcgctgctgctgccgccgcgctacaagtaa
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