Pseudogulbenkiania sp. NH8B: NH8B_3581
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Entry
NH8B_3581 CDS
T01619
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NH8B_3581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pse03400
]
NH8B_3581
Enzymes [BR:
pse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NH8B_3581
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NH8B_3581
DNA repair and recombination proteins [BR:
pse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NH8B_3581
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF7573
Motif
Other DBs
NCBI-ProteinID:
BAK78331
LinkDB
All DBs
Position
3757843..3758661
Genome browser
AA seq
272 aa
AA seq
DB search
MPELPEVETTRRGVEPHLTGAIITDVVVREGRLRWPVPPALAATLSGLPVLAVRRRAKYL
LLEFASGTLLVHLGMSGSLRLVAADTPPQKHDHIDLILDGHTALRYRDPRRFGAMLWHVG
PVEFHPLLAALGPEPLGDAFDADTLYHASRGRTTSIKQLLMDNHVVVGVGNIYANESLFQ
AGIRPGRAARRLTHADCERLAAAIKSILARAIEAGGSTLRDFVGASGKPGYFQQTYAVYG
RAEEPCHTCGSLIRQIRQGQRSSYYCPHCQPW
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattacctgaagtggaaaccacccggcgcggggtcgagccacacctcaccggc
gccatcatcaccgacgtcgtggtacgtgagggacgcctgcgctggccggtgccaccggca
ctggccgcgaccctcagcggtctgccggtactggcggtgcgccgccgcgccaaatacctg
ctgctggagttcgccagcggcacgctgctggtgcaccttggcatgtccggcagcctgcgg
ctggtggcggccgacacgccgccgcaaaaacacgaccatatcgatctcatcctggacggg
cacaccgcgctgcgctatcgcgacccgcgccgcttcggcgccatgctgtggcacgtcggc
ccggtggagttccacccgctgctggcggcgctgggaccggagccgctcggcgacgcgttc
gacgccgacacgctgtaccacgccagccgcgggcgcacgacgtcgatcaagcagttgctg
atggacaatcatgtggtggtgggggtgggtaacatctacgccaacgagtccctgttccag
gccggcatccgtccggggcgtgccgcacgccgcctgacccatgccgactgcgaacgcctg
gccgcggccatcaagagcatcctggcacgcgccatcgaggccggcggcagcacgctgcgc
gacttcgtcggtgccagcggcaagcccggttacttccagcagacctacgcggtgtacggt
cgcgccgaggagccctgccacacctgcggctcattgatacgtcagattcgccaggggcag
cggagttcctactactgtccgcattgccagccatggtag
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