Pseudogulbenkiania sp. NH8B: NH8B_3601
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Entry
NH8B_3601 CDS
T01619
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NH8B_3601 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pse03400
]
NH8B_3601 (recD)
Enzymes [BR:
pse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NH8B_3601 (recD)
DNA repair and recombination proteins [BR:
pse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NH8B_3601 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
NAT10_TcmA_helicase
AAA_22
SH3_13
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
UvrD_C
AAA_28
T2SSE
CbiA
AAA_25
FtsK_SpoIIIE
DEAD
Herpes_Helicase
nSTAND_NTPase5
AAA_24
AAA_7
ATPase
AAA_5
TrwB_AAD_bind
NACHT
NTPase_1
AAA
KTI12
Motif
Other DBs
NCBI-ProteinID:
BAK78350
LinkDB
All DBs
Position
complement(3779597..3781300)
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AA seq
567 aa
AA seq
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MTPTPSDNPLVAQLLPLFARLDPAAGAELAALVEQLAAANQAGHVCLPLGARAARLPASP
LVGRPGDYAPLILDRAGRLYFARHWHDEERLARRLAALAAAPFDVDAARLAAVLARLFPT
ADPAQPDRQKLAAALALRQRLVVISGGPGTGKTTTVVRLLAALAELSPRPLAMAMAAPTG
KAAARLTESVQGASAQLALDSAVRRQLPDSAQTLHRLLGLRPGLATPRHHAGHPLPLDVL
VVDEASMIDLALMAKTLDALPPHARLILLGDRDQLASVDPGAVLGELCQTVSYRPDTLAW
LARACGALPDGLATAPHALADSVVLLTHSHRFAADSGIGALARAVNAGDAARALAVLDDD
TCPDVAWQPGDLAEGLWQARQGYFAAVAAGAAPDELQREFGRFMVLAAERRQVDACNRAV
EARLEAAGRKSPERDNYPGRPLMITENDYGIGLFNGDIGFTVPRADGLRVAFPSADGGWR
EIAPGRLPAHQTVFAMTVHKSQGSEFERVWLALPEAASASLNRALVYTAITRARREFAVQ
GSAAVWSAALERAPERASGLAERLAEG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgactccgtccgacaatccgcttgtcgcccagctgctgccgctgttcgcccgg
ctcgaccccgccgccggcgccgagctggcggcgctggtggagcagctcgccgccgccaac
caggccggccacgtctgcctgccgttgggcgcgcgcgccgcccgcctgccggcctcgccg
ctggtggggcggcccggcgactacgcgccgctgatcctcgaccgggccggccggctctat
ttcgcgcgccactggcacgacgaggagcgcctggcgcgccgtcttgccgcgctagccgcc
gcccccttcgacgtcgacgcggcgcgcctcgccgccgtgctggcgcggctgttccccacc
gccgacccggcgcagccggaccgccagaagctggctgcggcgctggcgttgcggcaacgc
ctggtggtgatctccggcggccccggcaccggcaagaccaccaccgtggtgcgcctcttg
gcggcgctggccgaactgtcgccgcgcccgctggcgatggcgatggcggcccccaccggc
aaggcggcggcacgcctgaccgaatcggtgcagggggccagcgcgcagctcgcgctcgac
tccgcggtgcggcgccagttgcccgacagcgcgcagacgctgcaccgcctgctgggcctg
cgccccgggctcgccacgccgcgccaccacgccggccatccgctgccgctcgacgtgctg
gtggtggacgaggcgtcgatgatcgacctcgcgctgatggccaagacgctcgacgcgctg
ccgccgcacgcgcgattgatcctgctgggcgaccgcgaccagctcgcctcggtcgacccc
ggcgcggtgctgggcgagttgtgccagacggtgagctaccgcccggacacgctggcctgg
ctcgcccgggcctgcggcgcgctgccggacgggctcgctaccgcgccgcacgcgctggcc
gacagcgtggtgctgctgacgcatagccaccgcttcgccgccgacagcggcatcggcgcg
ctggcgcgcgcggtcaatgccggcgacgccgcccgggcgctcgccgtgctcgacgacgac
acctgtcccgacgtcgcctggcagcccggcgatctggccgaggggctgtggcaggcgcgc
cagggctacttcgccgcggtcgccgccggtgccgcgccggatgagctgcaacgcgagttc
ggccgcttcatggtgctggcggcggagcggcgccaggtcgacgcctgcaaccgcgccgtc
gaggcgcggctggaagccgccgggcgcaagtcgccggagcgcgacaactatcccggccgg
ccgctgatgatcaccgagaacgactacggcatcggcctgttcaacggcgacatcggcttc
acggtgccgcgcgccgacggcctgcgcgtggcctttcccagcgccgacggcggctggcgc
gagatcgcgccggggcggctgccggcgcaccagacggtgttcgccatgaccgtgcacaag
agccagggctcggagttcgagcgcgtctggctggcgctgcccgaggcggcttcggccagc
ctcaaccgcgccctggtctacaccgcgatcacgcgcgcgcgccgcgagttcgcggtgcag
ggcagcgccgcggtgtggagcgccgccctggagcgcgcccccgagcgcgcctccggcttg
gccgagcgcctcgccgagggctga
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