Pseudogulbenkiania sp. NH8B: NH8B_3979
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Entry
NH8B_3979 CDS
T01619
Name
(GenBank) two component, sigma54 specific, transcriptional regulator, Fis family
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NH8B_3979
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pse02022
]
NH8B_3979
02035 Bacterial motility proteins [BR:
pse02035
]
NH8B_3979
Two-component system [BR:
pse02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
NH8B_3979
Bacterial motility proteins [BR:
pse02035
]
Pilus system
Twitching motility proteins
NH8B_3979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_50
HTH_30
AAA_16
HTH_28
AAA_22
PG_1098_Fer
Motif
Other DBs
NCBI-ProteinID:
BAK78716
LinkDB
All DBs
Position
complement(4170558..4171904)
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AA seq
448 aa
AA seq
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MTRTSPRRVLVVDDEPDIRELLELTLIKMGLEVVTAASVGDACRQLSRQPFDLALTDMRL
PDGEGLAVVEHIGQAGLDVPVAVITAYGSADNAVAAMKAGAFDYLQKPVSLAQLRTLVQS
ALALEGRAAGGVVDGAVRLAGESPAMQEVRRLIERLARTQAAVYIHGESGTGKEQAARLI
HEQGPRAARPFVPVNCGAIPESLMESEFFGHRKGAFTGADSERDGFFQQANGGTLFLDEV
ADLPLAMQVKLLRAIQEKRVRKLGGGPEEAVDVRLLCATHHDLAALVDSGAFRQDLYYRL
NVIQLTMPPLRELREDIPLFVGRLLERLAGDGPRPRLSPDAVKALLGYNYPGNFRELENI
LERAVALASDARVDVADLQLSDAACSEGGAEPPVAGGGEGLQEYLDRVERDAIVKALQAT
RFNRTQAAKLLGVSFRSLRYRLERLGIK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgactagaacctccccccgccgcgtgctggtcgtcgacgacgagccggacatccgcgaa
ctgctggaactgacgctgatcaagatggggctggaggtggtcaccgccgccagcgtcggc
gacgcctgccgccagctgtcgcgccagccgttcgacctggcgctgaccgacatgcgcctg
ccggacggcgaagggctggcggtggtcgagcacatcggccaggccgggctcgacgtgccg
gtggcggtgatcactgcctacggcagcgccgacaacgcggtggcggcgatgaaggccggc
gccttcgactacctgcaaaagccggtcagcctggcgcagctgaggacgctggtgcaatcg
gcgctggcactggagggacgcgcggctggtggtgtcgtggacggcgcggtgcggctggcg
ggtgaatcgccggcgatgcaggaggtgcggcggctgatcgagcggctggcgcgtacccag
gccgcggtctacatccatggcgagtccggcaccggcaaggagcaggctgcgcggctgatc
cacgagcaggggccgcgcgcggcgcggccgttcgtgccggtcaactgcggcgccatcccg
gaaagcctgatggagagcgagttcttcggtcatcgcaagggcgccttcaccggcgccgac
agcgaacgcgacggcttcttccagcaggccaacggcggcacgctgttcctcgacgaggtg
gccgacctgccgttggcgatgcaggtcaagctgctgcgcgcgatccaggagaagcgcgtg
cgcaagctgggcggcggccccgaggaggcggtcgacgtgcgcctgttgtgcgccacccac
cacgacctggcggcgctggtcgacagcggcgcgttccgccaggacctctactaccgcctc
aacgtcatccagctcaccatgccgccgctgcgcgagctgcgcgaggacatcccgctgttc
gtcggccgcctgctggagcggctggccggcgacggcccgcgtccgcgcctcagcccggac
gcagtgaaggcgctgttggggtacaactatcccggcaacttccgcgaactggaaaacatt
ctcgaacgcgccgtggcgctggccagcgacgcgcgggtggacgtggccgacctgcagttg
tccgatgccgcgtgcagcgagggcggggctgagccgccggtggcgggcgggggcgaaggg
ttgcaggagtacctcgatcgggtcgagcgcgatgccatcgtcaaggcgctgcaggcgacc
cgtttcaaccgcacccaggcggccaagctgctcggggtcagcttccgctcgctgcgctac
cgcctggagcgcctcggcatcaagtag
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