Pseudogulbenkiania sp. NH8B: NH8B_3989
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Entry
NH8B_3989 CDS
T01619
Symbol
dnaQ
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03030
DNA replication
pse03430
Mismatch repair
pse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NH8B_3989 (dnaQ)
03430 Mismatch repair
NH8B_3989 (dnaQ)
03440 Homologous recombination
NH8B_3989 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pse03032
]
NH8B_3989 (dnaQ)
03400 DNA repair and recombination proteins [BR:
pse03400
]
NH8B_3989 (dnaQ)
Enzymes [BR:
pse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NH8B_3989 (dnaQ)
DNA replication proteins [BR:
pse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NH8B_3989 (dnaQ)
DNA repair and recombination proteins [BR:
pse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NH8B_3989 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
HisKA
DEDDh_C
RNase_H_2
HAMP
DNA_pol_A_exo1
SEF14_adhesin
DUF4131
Motif
Other DBs
NCBI-ProteinID:
BAK78726
LinkDB
All DBs
Position
complement(4183984..4186107)
Genome browser
AA seq
707 aa
AA seq
DB search
MTPSRKLGLAAGTVCLVLVAALAATAWLAWHAARGTGLALNDLVTALLILALLLCGSAVA
ALRDAVARYVRAPLRLAEQVATVVADASRRVKTDGGSELHGLVLAINELAAARAALQRDV
AEQVRTAQRSLEAEKNRLAALMAELHQSVVVCNLDGRILLYNQHARSEVGDELLGLGRSI
YAIFDHGLIAYALESVGQRLGRESAPAAEFVAATAAGRLLRVHLAPVLGGDAQEAATAAP
TIAGFVLILDDITASFAEESRRDTVIQAFTEGVRGPLGSLRAAAEMLSDYGDMGEDERRR
FLGVIRDEAQQLSQRLEHAASDYGDALKARWPLEVVRGVDVVTAALQRVTAQTGVPCKAE
DLDDTLWIKVDSFSLLQALSYLTGRLHDEYGVREVRLALSRAEHHAQLDLIWSGTAMNTE
TAMSWELDAMRGAGTSAPSVREVVERCNGEMWFERQRAAHRALFRLLLPLVEPRRERHEE
TRFLRGGSRPEFYDFDLFRWSEGGHALDERLLSELSYTVFDTETTGLEPAAGDEIIQIGA
TRIVNRRLLQHEGFEQLIDPRRPLPEDSVKIHGITSEMLAGQPPLDTVLPAFRAYCADTV
LVAHNAAFDMRFLQLKEASTGVRFDQPVLDTLLLSAVLHPNQESHRLEAIAERLGVTIIG
RHTAMGDAIVTGEVFLKMIPLLAEKGIRTLREAREASERTYYARIRY
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgtcgcgcaaactggggctggctgccggcaccgtctgtctcgtcctcgtcgcg
gcactggcggccacggcgtggctggcttggcacgccgcccgcggcaccgggctcgccctc
aacgacctggtgacggcgctgctgatcctcgccctgctgctgtgcggcagcgcggtggcg
gcattacgcgacgcggtggcgcgctacgtgcgggcgccgctgcgcctggccgagcaggtc
gccaccgtggtggccgacgcgtcgcgccgggtgaagaccgacggcggcagcgagttgcac
ggcctggtcctggcgatcaacgagctggcggcggcgcgcgcggcgctgcagcgcgacgtg
gcggaacaggtacgcaccgcgcaacgctcgctcgaggccgagaagaaccgcctcgcggcg
ctgatggcggagttgcaccagagcgtggtggtgtgcaacctcgacggccgcatcctgctc
tacaaccagcacgcgcgcagcgaggtcggcgacgagttgctggggctggggcgctcgatc
tacgccattttcgatcacggcctgatcgcctacgcgctggagagcgtgggccagcgcctc
gggcgcgagagtgcgccggcggcggagttcgtcgccgccaccgcggccggccggttgctg
cgcgtgcacctggcgccggtgctgggcggtgacgcccaggaggccgccacggccgcgccg
acgatcgccggcttcgtgctgatcctcgacgacatcactgccagcttcgccgaggagtcg
cggcgcgacaccgtgatccaggcctttaccgaaggcgtgcgcgggccgctgggcagcctg
cgtgccgccgccgaaatgctgtcggactacggcgacatgggcgaagacgagcggcgccgt
ttcctcggggtgatccgtgacgaggcgcagcagctgtcgcagcgcctggagcatgccgcc
agcgactacggcgacgccctcaaggcgcgctggccgctggaggtggtgcgcggcgtggac
gtggtgacggccgcgctgcagcgggtcacggcgcagaccggcgtgccgtgcaaggccgag
gacctcgacgacacgctgtggatcaaggtcgacagtttctcgctgttgcaggcgctgagc
tacctcaccggccgcctgcacgacgagtacggcgtgcgcgaggtgcgtctggcgctgtcg
cgcgccgagcaccacgcccagctcgacctgatctggagcggcaccgccatgaacaccgag
accgcgatgtcctgggagctcgacgccatgcggggggccggaaccagcgcgccgtcggtg
cgcgaggtggtcgagcgctgcaacggcgagatgtggttcgagcgccagcgcgccgcgcac
cgcgccctgtttcggctgctgctgccgctggtcgagccgcgtcgcgagcgtcacgaagag
acgcgcttcctgcgcggcggcagccggccggagttctacgacttcgacctgttccgctgg
tcggagggcggccacgccctcgacgagcgcctgctgtcggagctgtcctacaccgtgttc
gataccgagaccaccgggctggagcccgccgccggcgacgagatcatccagatcggcgcc
acccgcatcgtcaaccgtcgcttgctgcagcacgagggcttcgagcagttgatcgatccg
cggcggccgctgccggaggactcggtgaagatccatggcatcacctccgagatgctggcg
ggccagccgcccctcgacaccgtgctgccggcgttccgcgcctactgcgccgacaccgtg
ctggtggcgcacaacgccgccttcgacatgcgcttcctgcagctgaaggaggcgtcgacc
ggggtgcgtttcgaccagccggtgctcgacacgctgctgctgtcggcggtgctgcacccg
aaccaggagtcgcaccgcctggaggcgatcgcggagcggctgggggtgaccatcatcgga
cgccacaccgcgatgggcgacgccatcgtcaccggcgaggtgttcctgaagatgatcccg
ttgctggcggaaaagggcatccgcacgctgcgcgaggcgcgcgaggcgtcggagcggacc
tattacgcgcgcatccgctactga
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